PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009824m
Common NameCISIN_1g009670mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 525aa    MW: 57462.4 Da    PI: 5.7739
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009824mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.68.7e-21191239150
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 
                        kpr++Wt+eLH++F+ av+ L G +kA+Pk+il+lm+v+gLt+e+vk  L
  orange1.1g009824m 191 KPRVVWTTELHTKFIGAVNLL-GLDKAVPKKILDLMNVEGLTRENVKFRL 239
                        79*******************.************************9766 PP
2Response_reg76.41.1e-25261351110
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+++ +++l+++l++ +y ev+++  +  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+++++a+++ +++ + +
  orange1.1g009824m  26 VLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRnnFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGI 115
                        799********************.***************999889*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvka 110
                        + Ga d+l Kp+ +eel ++
  orange1.1g009824m 116 NHGACDYLLKPVRMEELKNT 135
                        *****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1371521IPR017053Response regulator B-type, plant
SuperFamilySSF521724.27E-3623148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-4223156No hitNo description
SMARTSM004487.3E-3324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.40825140IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-2326134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.53E-2827140No hitNo description
SuperFamilySSF466898.24E-13188240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-20188239IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-17191236IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MTAEEKGGSS SDEDGVIDKF PIGMRVLAVD DDQTCLKILE KFLRECQYEV TVTNRAITAL  60
KMLRENRNNF DLVISDVYMP DMDGFKLLEL VGLEMDLPVV MLSAYSDTKL VMKGINHGAC  120
DYLLKPVRME ELKNTWQHVI RRKKVDPKDQ NRSPHEFEKS YRKRKDQDGE DEDEDGDDDG  180
HENENSTTQK KPRVVWTTEL HTKFIGAVNL LGLDKAVPKK ILDLMNVEGL TRENVKFRLS  240
LKRLGNKTLE AGMVASVGSK DSSYLRIGAL DGFGGSHSVN SPGRLSSSAL SSSYVPGSMI  300
GRLNSSAGLS MHGIASSGMI KPGLSQSFNT SFNTIGKNQQ AMFPANRNSN LVQGVQTSLE  360
PNQMPQSEST THIGDFNHIN SPTAFTAATG FIDARVAVGS SSSSVSTSLS NLMMLQANPH  420
QAQSRDAYGN QSSLTVASLN QAYFDLGVHD SSNFLDHGRC QESWQDAVQL SKSSSISLPL  480
GEPFILDQVP PNKDNILSSN CYLDISSSIA NSTHLENSRG DLSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-20187244163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486037.10.0two-component response regulator ARR10-like isoform X2
TrEMBLA0A067FWF00.0A0A067FWF0_CITSI; Two-component response regulator
STRINGXP_006486036.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-101response regulator 10