PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g009670m | ||||||||
Common Name | CISIN_1g009670mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 530aa MW: 57999 Da PI: 5.8965 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.9 | 1.9e-27 | 191 | 244 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt+eLH++F+ av+ L G +kA+Pk+il+lm+v+gLt+e+v+SHLQk+Rl orange1.1g009670m 191 KPRVVWTTELHTKFIGAVNLL-GLDKAVPKKILDLMNVEGLTRENVASHLQKFRL 244 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.4 | 1.1e-25 | 26 | 135 | 1 | 110 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl vdD+++ +++l+++l++ +y ev+++ + al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+++++a+++ +++ + + orange1.1g009670m 26 VLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRnnFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGI 115 799********************.***************999889*******************87754.558******************* PP HTTESEEEESS--HHHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvka 110 + Ga d+l Kp+ +eel ++ orange1.1g009670m 116 NHGACDYLLKPVRMEELKNT 135 *****************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.9E-147 | 1 | 525 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 4.41E-36 | 23 | 148 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-42 | 23 | 156 | No hit | No description |
SMART | SM00448 | 7.3E-33 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.408 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.7E-23 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.62E-28 | 27 | 140 | No hit | No description |
PROSITE profile | PS51294 | 10.894 | 188 | 247 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-19 | 188 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-28 | 188 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-24 | 191 | 244 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 193 | 242 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 530 aa Download sequence Send to blast |
MTAEEKGGSS SDEDGVIDKF PIGMRVLAVD DDQTCLKILE KFLRECQYEV TVTNRAITAL 60 KMLRENRNNF DLVISDVYMP DMDGFKLLEL VGLEMDLPVV MLSAYSDTKL VMKGINHGAC 120 DYLLKPVRME ELKNTWQHVI RRKKVDPKDQ NRSPHEFEKS YRKRKDQDGE DEDEDGDDDG 180 HENENSTTQK KPRVVWTTEL HTKFIGAVNL LGLDKAVPKK ILDLMNVEGL TRENVASHLQ 240 KFRLSLKRLG NKTLEAGMVA SVGSKDSSYL RIGALDGFGG SHSVNSPGRL SSSALSSSYV 300 PGSMIGRLNS SAGLSMHGIA SSGMIKPGLS QSFNTSFNTI GKNQQAMFPA NRNSNLVQGV 360 QTSLEPNQMP QSESTTHIGD FNHINSPTAF TAATGFIDAR VAVGSSSSSV STSLSNLMML 420 QANPHQAQSR DAYGNQSSLT VASLNQAYFD LGVHDSSNFL DHGRCQESWQ DAVQLSKSSS 480 ISLPLGEPFI LDQVPPNKDN ILSSNCYLDI SSSIANSTHL ENSRGDLSY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-25 | 187 | 249 | 1 | 63 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006486036.1 | 0.0 | two-component response regulator ARR10-like isoform X1 | ||||
TrEMBL | A0A067FK90 | 0.0 | A0A067FK90_CITSI; Two-component response regulator | ||||
STRING | XP_006486036.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31920.1 | 1e-107 | response regulator 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g009670m |