PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009388m
Common NameCISIN_1g009388mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 537aa    MW: 59582.1 Da    PI: 4.4564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009388mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.6e-5391391127
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp  + +k+e+ ew+fF++rd+ky++g r+nrat++gyWkatgkd+
  orange1.1g009388m   9 LPLGFRFRPTDEELINHYLRLKINGRDSEV-EVIPEIDVCKLEPWDLPglSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDR 99 
                        699************************999.99***************6447888999********************************** PP

                NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                        ++ s+   +++ +g+kktLvfy+grapkge+t+W+mheyr
  orange1.1g009388m 100 TIRSRkagTNACIGMKKTLVFYRGRAPKGERTNWIMHEYR 139
                        ****96655566***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-603165IPR003441NAC domain
PROSITE profilePS5100558.1089165IPR003441NAC domain
PfamPF023659.1E-2810139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAVISMESLP LGFRFRPTDE ELINHYLRLK INGRDSEVEV IPEIDVCKLE PWDLPGLSVI  60
KTEDPEWFFF CPRDRKYPNG LRSNRATEAG YWKATGKDRT IRSRKAGTNA CIGMKKTLVF  120
YRGRAPKGER TNWIMHEYRP TREDLLDSST KPSQAAFVLC RLFRKPEEKV DVLKYDEVEQ  180
TESPDTNKSS LDDTSSDLVQ ETAMSNYVTP NAVLPVESCG NSHITSDVED HSTGGTVLEE  240
YQVPGEILNQ FDMPSNGQID CKIFSPVQSQ IHPDIAAYMD SPFASDFGND HFGLNFKDGA  300
GELDVSLTEL FDEVFNYQDE FSCAESINQK ELDVKSEVQL PGQVYMPQTI SPRNFHAQDN  360
GTCSDTDTDM SQVQQCDLVM GSSRLFSEHV ESKDLLQAPS CFGSCQAEAS LNDQEIGKGT  420
ICDYGDNSAV QVASSAVGSL YGNLNNYDLS PTLNNSVNYG GDFAVGTGIK IRTRQPQQRP  480
NSFNSVNQGT AQRRLRLQVT LSPPMVGGDK QKDLGHSVED DEVQSGVTKV EITGQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-46416512165NO APICAL MERISTEM PROTEIN
1ut4_B6e-46416512165NO APICAL MERISTEM PROTEIN
1ut7_A6e-46416512165NO APICAL MERISTEM PROTEIN
1ut7_B6e-46416512165NO APICAL MERISTEM PROTEIN
4dul_A6e-46416512165NAC domain-containing protein 19
4dul_B6e-46416512165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.115520.0vegetative meristem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439176.10.0protein NTM1-like 9
TrEMBLA0A067GMZ80.0A0A067GMZ8_CITSI; Uncharacterized protein
STRINGXP_006439176.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-128NAC 014