PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g009017m | ||||||||
Common Name | CISIN_1g008254mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARR-B | ||||||||
Protein Properties | Length: 547aa MW: 60719.6 Da PI: 6.3298 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 58.2 | 1.8e-18 | 318 | 358 | 15 | 56 |
G2-like 15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++ orange1.1g009017m 318 MKAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 358 68*****.********************************96 PP | |||||||
2 | Response_reg | 26.3 | 3.7e-10 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl+ d + + + l+ le +y +v ++ + eal + +k +++ ++ + ++ dG+ +k +++++ +lp i+ + +++ +++ orange1.1g009017m 20 VLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPenFHVAIVEVTTSNTDGS--FKFLETAK-DLPTIITSNIHCLSTMMKCI 107 7889999999999999*******.***************666556***************7..67777766.899999998888******** PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 +Ga +fl Kp ++++l++ orange1.1g009017m 108 ALGAVEFLRKPLSEDKLRN 126 ***************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 4.2E-15 | 16 | 164 | No hit | No description |
SuperFamily | SSF52172 | 2.42E-14 | 16 | 134 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 20.027 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-6 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.85E-8 | 21 | 131 | No hit | No description |
SuperFamily | SSF46689 | 6.27E-10 | 316 | 361 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 316 | 361 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-16 | 318 | 358 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MVCTANDLSA WKDFPKGLRV LLLDQDSSAA AELKFKLEAM DYIVSTFYNE NEALSAFSDK 60 PENFHVAIVE VTTSNTDGSF KFLETAKDLP TIITSNIHCL STMMKCIALG AVEFLRKPLS 120 EDKLRNLWQH VVHKAFNAGG SALSDSLKPV KESVVSMLHL KLENGESKNE KSENTEYVLV 180 PQQSDNEQSV PNDKYPAPST PQLKQGGRLL DDIDCQDNTN FSTEKESAEQ DGESKFVETT 240 CGNSIAEGTL QEDKPQRPRE TIVKEEHDPT NGSKTECNML PLPYEKDNLK GSNCVIENPS 300 KASGLQNSCG NKANRKKMKA VEQLGVDQAI PSRILELMKV EGLTRHNVAS HLQKYRMHRR 360 HILPKEDDRK WPHARDQMLR NYYPHKPIMA FPPYHSNHLV PTGPVYPVWG APSNHLAAVQ 420 MWAPPGYPPW QQAESWNWKP YPGMPADAWG CPVMPLPNGP YSSFPQGASG YHNSGVDDNS 480 YAMPQNSVDL HPAEEVIDKV VKEAISKPWL PLPLGLKPPS ADSVLAELSR QGISTIPPRI 540 NGSHPC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.17638 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436789.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_006485404.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_006485405.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-143 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A067DYT9 | 0.0 | A0A067DYT9_CITSI; Uncharacterized protein | ||||
STRING | XP_006485404.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436789.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-145 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g009017m |
Publications ? help Back to Top | |||
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