PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008619m
Common NameCISIN_1g008254mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 560aa    MW: 62328.5 Da    PI: 6.3822
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008619mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14e-28317371156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  orange1.1g008619m 317 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                        5689*****************.********************************96 PP
2Response_reg26.33.8e-10201261109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+ d + + +  l+  le  +y +v ++ +  eal  + +k   +++ ++ +  ++ dG+  +k +++++ +lp i+ +     +++ +++
  orange1.1g008619m  20 VLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPenFHVAIVEVTTSNTDGS--FKFLETAK-DLPTIITSNIHCLSTMMKCI 107
                        7889999999999999*******.***************666556***************7..67777766.899999998888******** PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                         +Ga +fl Kp ++++l++
  orange1.1g008619m 108 ALGAVEFLRKPLSEDKLRN 126
                        ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.4E-1516164No hitNo description
PROSITE profilePS5011020.02719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-620126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.92E-821131No hitNo description
PROSITE profilePS5129415.114314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-27315374IPR009057Homeodomain-like
SuperFamilySSF466891.43E-18316374IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-25317371IPR006447Myb domain, plants
PfamPF002491.0E-8320369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVCTANDLSA WKDFPKGLRV LLLDQDSSAA AELKFKLEAM DYIVSTFYNE NEALSAFSDK  60
PENFHVAIVE VTTSNTDGSF KFLETAKDLP TIITSNIHCL STMMKCIALG AVEFLRKPLS  120
EDKLRNLWQH VVHKAFNAGG SALSDSLKPV KESVVSMLHL KLENGESKNE KSENTEYVLV  180
PQQSDNEQSV PNDKYPAPST PQLKQGGRLL DDIDCQDNTN FSTEKESAEQ DGESKFVETT  240
CGNSIAEGTL QEDKPQRPRE TIVKEEHDPT NGSKTECNML PLPYEKDNLK GSNCVIENPS  300
KASGLQNSCG NKANRKKMKV DWTPELHKKF VQAVEQLGVD QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HRRHILPKED DRKWPHARDQ MLRNYYPHKP IMAFPPYHSN HLVPTGPVYP  420
VWGAPSNHLA AVQMWAPPGY PPWQQAESWN WKPYPGMPAD AWGCPVMPLP NGPYSSFPQG  480
ASGYHNSGVD DNSYAMPQNS VDLHPAEEVI DKVVKEAISK PWLPLPLGLK PPSADSVLAE  540
LSRQGISTIP PRINGSHPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-16322371655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.176380.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436789.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485404.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485405.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-155APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A067DQE00.0A0A067DQE0_CITSI; Uncharacterized protein
STRINGXP_006485404.10.0(Citrus sinensis)
STRINGXP_006436789.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-157ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]