PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g008335m

Common Name

CISIN_1g008335mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 570aa MW: 64829.9 Da PI: 6.7552

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g008335m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.5	2.5e-27	402	525	6	128
NAM 6 rFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 F Ptd elv+++L +kv++++ e + ik++++y++eP++L ++++++++ yfF++ ++ ++ nr+++ gyW++tg v +k orange1.1g008335m 402 AFIPTDTELVTYHLMNKVSARSYEQLDRfIKDIELYDYEPSELSsLAYHSGHDKKYFFTRLSQPAR---TVNRQAQGGYWRKTGMPSYVNDK 490 69******************7665555**********955777788899*998765...5899999************ PP NAM 96 kgelvglkktLvfykgrap..kgektdWvmheyrl 128 +g +v +k++L+++k+++p k+ekt+W+m+ey l orange1.1g008335m 491 DGDAVATKTSLTYFKKQDPtsKPEKTHWLMKEYML 525 **********8766511567*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-27	388	545	IPR003441	NAC domain
PROSITE profile	PS51005	29.859	397	547	IPR003441	NAC domain
Pfam	PF02365	3.2E-14	401	524	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MEHIETGRVP LRSVNSRDSE VPCKHKKCGL AILFFILEAV SVVLDIFEKS KGASLAAFLF 60 SAFGFAMTIY VCFLERTFTA IKPQADRQLG ILDIAFSVLQ LIATLIHLIL LVSDAKYNYN 120 ASVLFPLAFA IIAVLFVFKE RDTSTDSSRQ DLSPSANDSL LSTPFELYLS GITVEGDNSE 180 NNLRLSGQVQ EGPGIEKFRI IGEAKPGGKL LGYPVNGTTL STFQWIRFLE DDTRHSIEGA 240 TEPEYVVTAD DINKLIALEH TTIDDEGHEG KLVTVFANEH SKIKCDPDMQ SKVDMHISRG 300 QAAFRVLLLI NSSENTWEPA TLSFTQSRFH VKINSTDVVI SEGDLFNIIE IEIPIGLSRQ 360 FILRRLDGES HYFITNNDRM RDTLVLTMRT FRRMVLPPTV AAFIPTDTEL VTYHLMNKVS 420 ARSYEQLDRF IKDIELYDYE PSELSSLAYH SGHDKKYFFT RLSQPARTVN RQAQGGYWRK 480 TGMPSYVNDK DGDAVATKTS LTYFKKQDPT SKPEKTHWLM KEYMLLKSQQ PNQNDETPWT 540 LCVLYDFQRK RREGPFKRTE KNLWRRNNC*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MEHIETGRVP LRSVNSRDSE VPCKHKKCGL AILFFILEAV SVVLDIFEKS KGASLAAFLF  60
SAFGFAMTIY VCFLERTFTA IKPQADRQLG ILDIAFSVLQ LIATLIHLIL LVSDAKYNYN  120
ASVLFPLAFA IIAVLFVFKE RDTSTDSSRQ DLSPSANDSL LSTPFELYLS GITVEGDNSE  180
NNLRLSGQVQ EGPGIEKFRI IGEAKPGGKL LGYPVNGTTL STFQWIRFLE DDTRHSIEGA  240
TEPEYVVTAD DINKLIALEH TTIDDEGHEG KLVTVFANEH SKIKCDPDMQ SKVDMHISRG  300
QAAFRVLLLI NSSENTWEPA TLSFTQSRFH VKINSTDVVI SEGDLFNIIE IEIPIGLSRQ  360
FILRRLDGES HYFITNNDRM RDTLVLTMRT FRRMVLPPTV AAFIPTDTEL VTYHLMNKVS  420
ARSYEQLDRF IKDIELYDYE PSELSSLAYH SGHDKKYFFT RLSQPARTVN RQAQGGYWRK  480
TGMPSYVNDK DGDAVATKTS LTYFKKQDPT SKPEKTHWLM KEYMLLKSQQ PNQNDETPWT  540
LCVLYDFQRK RREGPFKRTE KNLWRRNNC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-12	393	548	14	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-12	393	548	14	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-12	393	548	14	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-12	393	548	14	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-12	393	548	17	169	NAC domain-containing protein 19
3swm_B	1e-12	393	548	17	169	NAC domain-containing protein 19
3swm_C	1e-12	393	548	17	169	NAC domain-containing protein 19
3swm_D	1e-12	393	548	17	169	NAC domain-containing protein 19
3swp_A	1e-12	393	548	17	169	NAC domain-containing protein 19
3swp_B	1e-12	393	548	17	169	NAC domain-containing protein 19
3swp_C	1e-12	393	548	17	169	NAC domain-containing protein 19
3swp_D	1e-12	393	548	17	169	NAC domain-containing protein 19
4dul_A	1e-12	393	548	14	166	NAC domain-containing protein 19
4dul_B	1e-12	393	548	14	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006484725.1	0.0	uncharacterized protein LOC102615249 isoform X1
TrEMBL	A0A067E7E1	0.0	A0A067E7E1_CITSI; Uncharacterized protein
STRING	XP_006484725.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21053	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-16	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	orange1.1g008335m