PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007551m
Common NameCISIN_1g007551mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 600aa    MW: 68622.1 Da    PI: 5.4162
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007551mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016299320122
                        EEETTTTEEESSHHHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                        + C  Cgk F++  + ++H ++
  orange1.1g007551m 299 FYCVLCGKKFKSEKQWTNHEQS 320
                        78*****************876 PP
2zf-C2H2130.00032570588220
                        EETTTTEEESSHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                        +C++Cg+ F ++  L++H+
  orange1.1g007551m 570 VCEKCGQEFETRNKLHKHL 588
                        6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465656.28E-22385IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.9E-23378IPR001623DnaJ domain
SMARTSM002718.8E-21668IPR001623DnaJ domain
CDDcd062575.13E-16765IPR001623DnaJ domain
PROSITE profilePS5007618.973776IPR001623DnaJ domain
PfamPF002262.6E-20873IPR001623DnaJ domain
PRINTSPR006253.7E-14927IPR001623DnaJ domain
PRINTSPR006253.7E-142742IPR001623DnaJ domain
PRINTSPR006253.7E-144868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.98E-14288341No hitNo description
SMARTSM004519.5E-6296330IPR003604Zinc finger, U1-type
PfamPF121711.0E-10299324IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.39299323IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141299328IPR007087Zinc finger, C2H2
PROSITE patternPS000280301323IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349569598IPR007087Zinc finger, C2H2
SMARTSM003553.6569593IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280571593IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MASEKRCLYE VLGLRKECTT DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY  60
EVLSDPKERA WYDSHRSQIL FSDLNSASNC GPVPNLYSYF SNTAFSGYSD SGKGFYKVYS  120
DLFNKIYSVE VSYVKKLGLG LDVLREAPIM GNLESPYGQV TAFYNYWLGF STVMDFCWVD  180
EYDVMAGPNR KSRRVMEEEN KKLRKKAKRE YNETVRELAA FVKKRDKRVM DMMVKKNEEI  240
ERKREEEKER KKRLEKERME RAKRYEEPAW ARIDDEGDNE VGNEEGLEEE EIEKKRSEFY  300
CVLCGKKFKS EKQWTNHEQS KKHKEKVADL RESFVDEDEV MADFGELDGE VEELGERFKD  360
NVGVEEREIG SGVGGLSGDE DVESEFFDVA DGVEVNEVDD RFGKEDEDED EDADDEVNML  420
KAMLSGHKNR KRVAVRKEDE VLKTEAHVEN EIGESEFMEY DNCKSTRRKN KKDRGKKSGG  480
EAAKGDRDGF KSTNEEANGH HNSGVIEESS SHSCVGNKNN GISDNHSEKD PKIPDQPVDG  540
KGTKKDRKAK LKNSSKGNKT KTASKNSSNV CEKCGQEFET RNKLHKHLGD TGHASLKFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208KKLRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477664.10.0DNAJ protein JJJ1 homolog isoform X1
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A067FQM80.0A0A067FQM8_CITSI; Uncharacterized protein
STRINGXP_006477664.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-172DNAJ heat shock N-terminal domain-containing protein