PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g007546m | ||||||||
Common Name | CISIN_1g007546mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 600aa MW: 65156.9 Da PI: 6.7675 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.4e-31 | 328 | 386 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ orange1.1g007546m 328 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 386 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.4E-34 | 312 | 388 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-28 | 320 | 388 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.953 | 322 | 388 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-37 | 327 | 387 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-27 | 328 | 386 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MAKGSGLSID HNISDPIAGK NKNFFLCHQP AVLNSFSDDH HHFHKFHYLM DAKRSPATTP 60 STIQFPVCLN HDEDSPQQSS DDHHHHNKRK VIDEMDFFTD KNTHSRDHHH YKDSKLELNV 120 NTGLNLLTTN TSSDHSTVDD GISTNMEDKK AKNEYAVVQA ELERVNAENQ RLKDMVNEVT 180 NNYNALQLQL MAFMQHHNAK AADENSDGRQ VEEKKGQLAA PRRFIDLGLG VNTADTADEP 240 ALSSSEGRSR DLGGSPVNGN SNNNEESNVL FGQDKKEFVQ RDDSPDRNYG PNKVPKFSSS 300 SKNVDQTEAT MRKARVSVRA RSEAPMINDG CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP 360 VRKQVQRCAE DRTILITTYE GNHNHPLPPA AMAMASTTSS AARLLLSGSM SSADGLMNAN 420 FLARTLLPCS SSMATISASA PFPTVTLDLT QTPNPSNVQR SPNQFQVPFP NPSHNFANGA 480 AAAAAGSLLP QIFGQALYNQ SKFSGLQMSQ DMDPSQLGNQ SQLPSPAMQQ GQQHNSLADS 540 VSAATAAIAA DPNFTAALAA AITSIINGGT PQSNNVTNNE NTDDLATTTN GNVKFSQSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-23 | 314 | 390 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447589.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Refseq | XP_006495237.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9XEC3 | 1e-140 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A067ELG6 | 0.0 | A0A067ELG6_CITSI; Uncharacterized protein | ||||
STRING | XP_006495237.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447589.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22070.1 | 1e-111 | WRKY DNA-binding protein 31 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g007546m |