PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007452m
Common NameCISIN_1g007452mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 604aa    MW: 63506.2 Da    PI: 6.2105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007452mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09204249145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                        r++WT+eEd+ l+ av++ G g+W+ I r      Rt+ q+  rw+
  orange1.1g007452m 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFkWDRTASQLSQRWN 249
                        789************************9843235677777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.616199256IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-14200254IPR009057Homeodomain-like
SuperFamilySSF466893.31E-13200253IPR009057Homeodomain-like
SMARTSM007171.8E-10203254IPR001005SANT/Myb domain
PfamPF002493.3E-8204249IPR001005SANT/Myb domain
CDDcd116606.67E-13205253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MVENTNKKQK KGSISEGDVS SLLQRYTANT VLALLQEVAQ FPDVKLDWNA LVKKTSTGIS  60
NAREYQMLWR HLAYRNTLFD KLEDNAQPLD DDSDLEYELE AFPEVSSEAS TEAAACVKVL  120
IASGLPSDSS LPNSSMVEAP LTINIPNGQS LRASTENSQP SSLMQGMNIT VPVAVQKVPL  180
PAPTPEVLDA NGLIGGSMPP RKKRKPWTAE EDLELISAVQ KCGEGNWANI LRGDFKWDRT  240
ASQLSQRWNI LRKKHGNVIL GSNSSGSQLS EAQLAARHAM SLALDMPVKN ITASCTNTTA  300
GTTSSATMNN PVPSTANAEA SSVANQSKLS PVGSPGSAVK SRVPLKKMPA KSNFGADSSI  360
RAAAVAAGAR IVTPSDAASL LKVAQAKKAI HIMPSGVSSI KSPSAGSASA HLEASPTTRY  420
VRPSLPAVPS SSSPAVTSSA SHPGLVKAAL PKVQHNTSCE QTNAVVSVPA TELQLKPEVK  480
AGEEIKVSGC SVSGNEPSKE IQLDLPKLDA EFKNQAAVAE NPDSSSNMEI VENGQVQSNG  540
NQPEGNGNQN GNDDKMVDSP VANGENQAAV KQKNSGLPQS SNNEEAELPT LVIDKCSSKN  600
LEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205PRKKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472453.10.0uncharacterized protein LOC102617361 isoform X1
TrEMBLA0A067GNL20.0A0A067GNL2_CITSI; Uncharacterized protein
STRINGXP_006472453.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-75MYB_related family protein