PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007099m
Common NameCISIN_1g007099mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 619aa    MW: 67180.3 Da    PI: 6.4104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007099mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30360418259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  orange1.1g007099m 360 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 418
                        7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-33344420IPR003657WRKY domain
SuperFamilySSF1182901.44E-27352420IPR003657WRKY domain
PROSITE profilePS5081129.516354420IPR003657WRKY domain
SMARTSM007741.5E-36359419IPR003657WRKY domain
PfamPF031062.7E-26361418IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MDKGWGLTLD SDHPIVSNLN FFTSNKPKPS LARFRTNRDM AASGAADSAS VRMFQLPASD  60
NSNAPSSSDD NRVAVDEVDF FSDDKNRVSI SDHREDDRNK TTNSVHIKKE NSHDQLRHRT  120
GLDVNTGLHL LTAANTGSDQ STVDDGVSSD HADEKRTKIE LTQLQVELQQ MNTENQRLRD  180
MLSQVTNNYN ALQMHIIALM QQQQENRRAP ESNQAHEVVE GKDEGKKHDD QVMVPRQFIG  240
LGPSAETDHE VSNCSSDEER TLSGTPPNIV EAASKEHVNS NGKNEIVSFD DQAAAAAAAE  300
NSNGKRIGRE ESPESETQGW GPNNKVQKLS SAKGIDQSNE ATMRKARVSV RARSEAPMIT  360
DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC AEDRTILITT YEGNHNHPLP  420
PAAMAMASTT TAAASMLLSG SMSSADGIMN PNLLARAILP CSSSMATISA SAPFPTVTLD  480
LTHSPNPLQL QRQAAQFQVQ FPGQPQNLAS VTNTQLPQVF GQALYNQSKF SGLQLSQNIG  540
SNSQSGSHQT LPPPLQQPQQ LADTVSAATA AITADPNFTA ALAAAITSII GGAQNPFSNN  600
SNNNNRSCII FTNFFFQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22346422176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.10530.0fruit| vegetative meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467403.10.0probable WRKY transcription factor 31
SwissprotQ9XEC31e-164WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A067GFB60.0A0A067GFB6_CITSI; Uncharacterized protein
STRINGXP_006467403.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-137WRKY DNA-binding protein 31