PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006944m
Common NameCISIN_1g006944mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 625aa    MW: 68094.6 Da    PI: 6.837
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006944mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07305325526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G C++Gd C +aHg
  orange1.1g006944m 305 PCPDFRK-GACRRGDMCEYAHG 325
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127961.7E-1183154IPR020683Ankyrin repeat-containing domain
CDDcd002041.08E-1686165No hitNo description
SuperFamilySSF484033.26E-1786165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.2E-1986167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.48487120IPR002110Ankyrin repeat
PROSITE profilePS5029719.54587180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001387117IPR002110Ankyrin repeat
PROSITE profilePS5008811.968122157IPR002110Ankyrin repeat
SMARTSM002482.6E-4122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6300326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4305327IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5305325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582305327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4333363IPR000571Zinc finger, CCCH-type
SMARTSM0035638335358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MCCGPERLNR TPSPRSPHIS FDESRHTNVD MNHLTVETDD AFASLLELAA NNDVEGFKRS  60
IVCDPSGVDE VGLWYGRQKG SKQMVNEQRT PLMVAATYGS IDIIRLILSE SGADVNLSCG  120
NDKSTALHCA ASGGALNAVD VVKLLLAAGA DPNFVDAKGH HPVDVIVVPP KFQDVRLTLE  180
ELLATDGSVE RNLRVSTTTS NSNSPPLSPA LENGSPTSAS GSPMKSMSVD APSFSVSEKK  240
EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTPEE  360
LRPLYVSTGS AVPSPRSSTS GATAMDFAAA LSLLPGSPSS VNVMSPSPFT PPMSPSANGI  420
SHSNVAWPQP NVPALHLPGS NLQSSRLRSS LNARDMPVDD FNMLPDFDVQ QQQLLNELST  480
LSQPTLSSSL NRSGRMKTLT PSNLDDLFSA ESSSPRYADQ ALAAAVFSPT HKSAVLNQFQ  540
QQQQQSMLSP INTNFSPKNV DHPLLQASLG CHHHQGGCPP EMWNLYHQWA PGYLYWLNVR  600
SSNNFAASAL GNLAPILLPL LVPR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.123590.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493920.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_006493921.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A067E2C00.0A0A067E2C0_CITSI; Uncharacterized protein
STRINGXP_006493920.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]