PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006378m
Common NameCISIN_1g006378mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 648aa    MW: 72227.6 Da    PI: 8.8683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006378mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.7e-111164148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                       +++W t E++ll++av+++G+ +W ++a +++      + +t+ +c+ ++++++
  orange1.1g006378m 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQkrsskfQLLTPLSCQQKYNDLK 64
                       799***********************************99**********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.28E-6966IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-51047IPR009057Homeodomain-like
SMARTSM007172.8E-51066IPR001005SANT/Myb domain
PfamPF002492.0E-101164IPR001005SANT/Myb domain
CDDcd001673.92E-51364No hitNo description
SMARTSM002972.0E-11274383IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.9E-16280382IPR001487Bromodomain
CDDcd043691.09E-14285378No hitNo description
SuperFamilySSF473704.58E-18285379IPR001487Bromodomain
PfamPF004394.0E-11292367IPR001487Bromodomain
PROSITE profilePS5001413.12293364IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MDNPSNNFPE KQAWGTKEEL LLACAVHRYG TQNWISVATE VQKRSSKFQL LTPLSCQQKY  60
NDLKRRFSGN DAVSISADNS DDAIPWLDQL KKLRVAELKR ELQLFDISIV SLQLKVERLI  120
EEREGKETED GEKRKRIEEN EPESLTDKPD GGEESDRENR SVNESNSTDQ KAEKTAKEPV  180
PSEPVRVEPE GVGSEGVKAA GEDSCNGSCG SAAKELERNT DRVDSAELGE SAAESMGRES  240
GDVQSFVSLL REKVKSEEPE EVEPGIGEDQ SPAATKRICA ESRPLVECIE IIRSHKFGSF  300
FERLDATKET PDYRSIVRQH TDLETIRTRL EENWYSGSNS SFFHDLLLLF NNVIVFFDKN  360
SSESAAAVEL RQIVLKAMTR NTFDPNSSMR EQYLEFAAAQ NVKLDVQSSD FLLSKPNILA  420
PLIACRKRSS ITAKRAVSLS SSLEAKKKEH TESSIGKNTV PSSVKSDDDC RATKKRTRER  480
SASGSGNSSK NRKTRDNMKT KKNLDVDIDA DDSSDVEETE CENSQRKNKA NVNAKKRSAE  540
IFLSRITRSS TLKDFVISSE DGKGERAEQK KKAEHKKKKG NGKIDAKKEQ IVQKRSGGKK  600
GEEMEGPVKK NGGRLTKRGA VPVAVGAEVS RGKRRKESVQ ARKRSRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.49680.0callus| flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429854.20.0uncharacterized protein LOC18038098
TrEMBLA0A067EGV20.0A0A067EGV2_CITSI; Uncharacterized protein
STRINGXP_006492877.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.19e-72DNA-binding bromodomain-containing protein