PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g005579m | ||||||||
Common Name | CISIN_1g005579mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 691aa MW: 80185.2 Da PI: 6.4359 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.3 | 3e-24 | 71 | 162 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+v+++++ HnHel orange1.1g005579m 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHEL 161 69********************8888.******************************************998766789*************9 PP FAR1 90 a 90 orange1.1g005579m 162 L 162 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-22 | 71 | 162 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.9E-22 | 294 | 387 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.101 | 564 | 600 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.4E-7 | 572 | 597 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-4 | 575 | 602 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MAMKPPTNIW IRRQQCPCGD WKCYIKYEGD DQASTSSQQE KTETTSSLLS SEVVFTPYVG 60 QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRML PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK 240 RENDTLELLE ACKNMAERDV DFVYDYTTDE NEKVENIAWS FGDSIRAYTL FGDVVTFDTS 300 YRSITYGLLL GVWFGMDNHG KAIFFGCVLL QDESTHSFAW ALQTFVRFMR GRHPQTILTD 360 IDLGLRDSIA RELPNTKHVV CIWHILSKLS SWFSSLLGSQ YEEFKAEFDM LCRLESVEDF 420 EHQWNHFVAR FGLVSDKHVA LLFSYRAFWL FSYIRGYFLA RMMTVEFSQS VDTFFKKILS 480 EQTCLQVFFE QVCAAAFGNS TREGVQYVHI KTCMPIEEHA RSILTPYAFR VLQHEIVLST 540 QYATTEMTNG SYLVRHYKKM DGEYLVIWIP EDEQIHCSCK EFEHSGILCR HSLRVLVVKN 600 YFQLPEKYLL LRWRLENSLV TMEGPNPQSS SDECAQAFHS LAAALLTESM ISKERFSYVH 660 KELTGLLDHV RNMPETNEFV VNMPAHNASD * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447802.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_006447803.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_015382916.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_024047442.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A067DDF4 | 0.0 | A0A067DDF4_CITSI; Uncharacterized protein | ||||
STRING | XP_006469463.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447802.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1765 | 26 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g005579m |
Publications ? help Back to Top | |||
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