PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g005549m

Common Name

CISIN_1g005549mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 692aa MW: 80093.1 Da PI: 6.5126

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g005549m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.2	2.1e-21	69	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 ++Y ++A++ GFsvrk++s+ s + g ++kr+fvC+++g++ +kk +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel orange1.1g005549m 69 EYYGNFARKSGFSVRKERSRLSPQLG-VYKRDFVCYRSGFAPMRKKPGGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHEL 159 59******************8888.****************9******************99877789***********9 PP FAR1 90 a 90 orange1.1g005549m 160 L 160 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-19	69	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-18	292	380	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	564	599	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.9E-7	568	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.7E-5	574	601	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MALLTSKNIW MRRQQCPCGD WKCYVSHEGD SEETSVASQL AKNDENSLNE SMVAPYVGMV 60 FKSDDDAFEY YGNFARKSGF SVRKERSRLS PQLGVYKRDF VCYRSGFAPM RKKPGGEHHR 120 DRKSVRCGCD AKMYLSKEVV EGVSQWFVVQ FSNVHNHELL ESDQVRFLPA YRKIQEADQE 180 RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRRRAVQE NDALLTEKRE 240 TDTMELLDIC KATNETDEYF VYDFTVDENN KVENIAWSFP GSIHAYAMLG DVVYFDTTYR 300 SITYGLIFGA WLGIDSNGRT ILFGVALLQD ETLRSFAWAL QTFVHFMKGR CPKTILTDLD 360 PGLGDAIRSA LPNTRHVISV CNILPKLSGW FSLLLGSQFS EFKSEFDALC HVESTEDFEL 420 QWSQMVSMFG LGSDRHIALL YSIRTSWALS YIRGYFLARM ATPAYLKSVD AFLKRIFAAQ 480 TCLRSFFEQV GIFSNLQNQP RQEMQYMHMK TCIPIEEQAR RTLTPFAFNA FQRELVLAMQ 540 YSASELANGT YLVHHFKKMD GERRVIWIPD DEQLHCSCKE FESSGIPCRH AFRVFITKNY 600 FQLPEKYFPS RWLRESSLAF FYDHDAQQNE EWIQEFHSLT ERLFAESSIT KERSDYIRKE 660 LTKELTRLLN EVRDMPESDG IAMDFTLSPT D*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MALLTSKNIW MRRQQCPCGD WKCYVSHEGD SEETSVASQL AKNDENSLNE SMVAPYVGMV  60
FKSDDDAFEY YGNFARKSGF SVRKERSRLS PQLGVYKRDF VCYRSGFAPM RKKPGGEHHR  120
DRKSVRCGCD AKMYLSKEVV EGVSQWFVVQ FSNVHNHELL ESDQVRFLPA YRKIQEADQE  180
RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRRRAVQE NDALLTEKRE  240
TDTMELLDIC KATNETDEYF VYDFTVDENN KVENIAWSFP GSIHAYAMLG DVVYFDTTYR  300
SITYGLIFGA WLGIDSNGRT ILFGVALLQD ETLRSFAWAL QTFVHFMKGR CPKTILTDLD  360
PGLGDAIRSA LPNTRHVISV CNILPKLSGW FSLLLGSQFS EFKSEFDALC HVESTEDFEL  420
QWSQMVSMFG LGSDRHIALL YSIRTSWALS YIRGYFLARM ATPAYLKSVD AFLKRIFAAQ  480
TCLRSFFEQV GIFSNLQNQP RQEMQYMHMK TCIPIEEQAR RTLTPFAFNA FQRELVLAMQ  540
YSASELANGT YLVHHFKKMD GERRVIWIPD DEQLHCSCKE FESSGIPCRH AFRVFITKNY  600
FQLPEKYFPS RWLRESSLAF FYDHDAQQNE EWIQEFHSLT ERLFAESSIT KERSDYIRKE  660
LTKELTRLLN EVRDMPESDG IAMDFTLSPT D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467286.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_006467287.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A067GT76	0.0	A0A067GT76_CITSI; Uncharacterized protein
STRING	XP_006467286.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	orange1.1g005549m

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]