PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005175m
Common NameCISIN_1g004911mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 711aa    MW: 77481.8 Da    PI: 6.5858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005175mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07287307526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G C++Gd C +aHg
  orange1.1g005175m 287 PCPDFRK-GACRRGDMCEYAHG 307
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-184151IPR020683Ankyrin repeat-containing domain
CDDcd002044.22E-177150No hitNo description
Gene3DG3DSA:1.25.40.204.8E-219195IPR020683Ankyrin repeat-containing domain
SMARTSM002486901141IPR002110Ankyrin repeat
PfamPF127963.5E-950125IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.31458151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00145888IPR002110Ankyrin repeat
PROSITE profilePS500889.195891IPR002110Ankyrin repeat
PROSITE profilePS5008811.78193128IPR002110Ankyrin repeat
SMARTSM002485.1E-493125IPR002110Ankyrin repeat
SMARTSM003564.0E-6282308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582287309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4287309IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5287307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4315345IPR000571Zinc finger, CCCH-type
SMARTSM0035667317340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MNNNSTAETE DSFTSMLELA SNNDVEGFKR MLERDPSSVD EVGLWYGRVN GSKQMVSEHR  60
TPLMVAATYG SVDVLKLILL HSSADVNVSC GSDRTTALHC AASGGSANVV DVVRLLLSAG  120
ADPDCVDANG HHPIDVIVLP PKLDSMRAIL EEVFGSKNSS VVVASGAEHN LTVSIGSSNS  180
DYSSPLLTAS ASGSPPSPSR LVSSPMALKF NDVSFGTGAE KREYPIDPSL PDIKNSIYAT  240
DEFRMFSFKI RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD  300
MCEYAHGVFE CWLHPAQYRT RLCKDGTSCD RRVCFFAHTA EELRPLYVSN GSVVPSPRSS  360
VSGASVMDMA AALLLPGSPS SMSGMSPNPF SQPMSPSGNG NLQSSMMWPQ PNVPTLNLPG  420
SNIQSSRLRS SLSARDILPD DFSSLSDFDS QQHILNDLTC FSQARNNSVS LSRSCRPKTL  480
TPSNLDELFS AEISSSPRFS DQAVFSPTHK SSVLNQFQQP HSMLSPIKTN VFSPKNVEHP  540
LLQASFRVGS PGRMSPRSVE PISPMGPRLA AFAQREKQQQ QLHSLSSRDP ISNNPIPNIG  600
SPRNVNSSWS KWGSPSGKLD WSIKGDELEL LRRSSSCDLR NNNHEEPDLS WIHSIVKESP  660
PEMMKEKTAN PVVTTASSGE ALNSNSQADS FDHSVIGAWL EQMQLDQLVV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.81360.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439118.10.0zinc finger CCCH domain-containing protein 30 isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A067GUK60.0A0A067GUK6_CITSI; Uncharacterized protein
STRINGXP_006439118.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]