PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g004988m | ||||||||
Common Name | CISIN_1g004963mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 721aa MW: 77670.6 Da PI: 5.9275 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.1e-32 | 301 | 358 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers +++++ei+Y+g Hnh+k orange1.1g004988m 301 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-EGHITEIIYKGAHNHPK 358 7****************************************.***************85 PP | |||||||
2 | WRKY | 103.7 | 9.9e-33 | 513 | 571 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ orange1.1g004988m 513 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 571 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.848 | 295 | 359 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.8E-28 | 299 | 359 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-36 | 300 | 358 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 300 | 359 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 301 | 357 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.3E-37 | 498 | 573 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 505 | 573 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.664 | 508 | 573 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 513 | 572 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.5E-25 | 514 | 571 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence Send to blast |
MVMAGIDDNM AVIGDWVPPS PSPRTFFAAI SGDDISSREP PSENGADGLS LGSQEQMTSG 60 NTEKKNMMTG GASTDLGPFS EQKSRLAARA GFNAPRLNTE SIRTSDLSLN PDIRSPYLTI 120 PPGLSPTTLL ESPVFLSNSL AQPSPTTGKF SFIPNGNGKS STCISEAPDK SKDNILEDIN 180 TSFAFKPVAE SGSFSLGTRN KSFPSIEVSV QSENSPQNVN AAKVHSQYRN SLSLQVQTDF 240 SRATTEKDNG CNTILADQRV FDTFGGSTEH SPPLDEQQDE EGDQRGSGDS MVAGAGGASS 300 EDGYNWRKYG QKQVKGSEYP RSYYKCTHPN CQVKKKVERS LEGHITEIIY KGAHNHPKPP 360 PNRRSAIGSN PLDMQLDIHE QAGLQSGADG DPSWANTQKG TAGGTPEWRH DTVEVTSAAP 420 VGPEYCNQSS ALPAQNGTPY ESGDAVDASS TFSNDEDEDD QVTHCSVGFD GEEDESESKR 480 RKIEAYATEM SGATRAIREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT 540 SAGCTVRKHV ERASHDLKSV ITTYEGKHNH DVPAARNSSH VNSGSSSAVA AHAAAAGQIH 600 RPEPSQLHNS MARFDRPASF GSFRVPGRQQ FGPSPGFSFG MHQPGLANLS MAGLGPGQPE 660 LPVLPVHPYL AQQRQVNEMG FMMPKGEPKV EPMSEPGLNL SNRSAVYQQL MSRLPLGPQM 720 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 301 | 574 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 301 | 574 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024033320.1 | 0.0 | probable WRKY transcription factor 2 isoform X2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A067G5R8 | 0.0 | A0A067G5R8_CITSI; Uncharacterized protein | ||||
STRING | XP_006474751.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g004988m |
Publications ? help Back to Top | |||
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