PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g004911m

Common Name

CISIN_1g004911mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 725aa MW: 78979.4 Da PI: 6.3438

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g004911m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	301	321	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg orange1.1g004911m 301 PCPDFRK-GACRRGDMCEYAHG 321 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.87E-18	18	165	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.38E-17	21	164	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.2E-21	23	209	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	690	25	55	IPR002110	Ankyrin repeat
Pfam	PF12796	3.5E-9	64	139	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	20.314	72	165	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0014	72	102	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.19	72	105	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.781	107	142	IPR002110	Ankyrin repeat
SMART	SM00248	5.1E-4	107	139	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	296	322	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	301	323	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	301	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-5	301	321	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-4	329	359	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	67	331	354	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MCCGPDKSES NTEDMNNNST AETEDSFTSM LELASNNDVE GFKRMLERDP SSVDEVGLWY 60 GRVNGSKQMV SEHRTPLMVA ATYGSVDVLK LILLHSSADV NVSCGSDRTT ALHCAASGGS 120 ANVVDVVRLL LSAGADPDCV DANGHHPIDV IVLPPKLDSM RAILEEVFGS KNSSVVVASG 180 AEHNLTVSIG SSNSDYSSPL LTASASGSPP SPSRLVSSPM ALKFNDVSFG TGAEKREYPI 240 DPSLPDIKNS IYATDEFRMF SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV 300 PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCDRRVCFF AHTAEELRPL 360 YVSNGSVVPS PRSSVSGASV MDMAAALLLP GSPSSMSGMS PNPFSQPMSP SGNGNLQSSM 420 MWPQPNVPTL NLPGSNIQSS RLRSSLSARD ILPDDFSSLS DFDSQQHILN DLTCFSQARN 480 NSVSLSRSCR PKTLTPSNLD ELFSAEISSS PRFSDQAVFS PTHKSSVLNQ FQQPHSMLSP 540 IKTNVFSPKN VEHPLLQASF RVGSPGRMSP RSVEPISPMG PRLAAFAQRE KQQQQLHSLS 600 SRDPISNNPI PNIGSPRNVN SSWSKWGSPS GKLDWSIKGD ELELLRRSSS CDLRNNNHEE 660 PDLSWIHSIV KESPPEMMKE KTANPVVTTA SSGEALNSNS QADSFDHSVI GAWLEQMQLD 720 QLVV*

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MCCGPDKSES NTEDMNNNST AETEDSFTSM LELASNNDVE GFKRMLERDP SSVDEVGLWY  60
GRVNGSKQMV SEHRTPLMVA ATYGSVDVLK LILLHSSADV NVSCGSDRTT ALHCAASGGS  120
ANVVDVVRLL LSAGADPDCV DANGHHPIDV IVLPPKLDSM RAILEEVFGS KNSSVVVASG  180
AEHNLTVSIG SSNSDYSSPL LTASASGSPP SPSRLVSSPM ALKFNDVSFG TGAEKREYPI  240
DPSLPDIKNS IYATDEFRMF SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV  300
PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCDRRVCFF AHTAEELRPL  360
YVSNGSVVPS PRSSVSGASV MDMAAALLLP GSPSSMSGMS PNPFSQPMSP SGNGNLQSSM  420
MWPQPNVPTL NLPGSNIQSS RLRSSLSARD ILPDDFSSLS DFDSQQHILN DLTCFSQARN  480
NSVSLSRSCR PKTLTPSNLD ELFSAEISSS PRFSDQAVFS PTHKSSVLNQ FQQPHSMLSP  540
IKTNVFSPKN VEHPLLQASF RVGSPGRMSP RSVEPISPMG PRLAAFAQRE KQQQQLHSLS  600
SRDPISNNPI PNIGSPRNVN SSWSKWGSPS GKLDWSIKGD ELELLRRSSS CDLRNNNHEE  660
PDLSWIHSIV KESPPEMMKE KTANPVVTTA SSGEALNSNS QADSFDHSVI GAWLEQMQLD  720
QLVV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.8136	0.0	flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439118.1	0.0	zinc finger CCCH domain-containing protein 30 isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A067H6R5	0.0	A0A067H6R5_CITSI; Uncharacterized protein
STRING	XP_006439118.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	orange1.1g004911m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]