PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g004266m
Common NameCISIN_1g004266mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 766aa    MW: 84245.5 Da    PI: 7.0216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g004266mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06352372526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+++++ G C++Gd C +aHg
  orange1.1g004266m 352 PCPDHRK-GACSRGDMCEYAHG 372
                        7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.3E-10134208IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-16139221IPR020683Ankyrin repeat-containing domain
SMARTSM002486.9E-4139169IPR002110Ankyrin repeat
PROSITE profilePS5029719.359139246IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.5E-18140219IPR020683Ankyrin repeat-containing domain
CDDcd002048.31E-16141217No hitNo description
PROSITE profilePS5008811.915174209IPR002110Ankyrin repeat
SMARTSM002480.0023174206IPR002110Ankyrin repeat
SMARTSM003560.0015347373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69352374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4379410IPR000571Zinc finger, CCCH-type
SMARTSM0035641382405IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MVAVPAVTMR NKSSPLKISI SIFQKHTQNV FLVDFAINDR TLLILLFFQN YLIMCGGSEK  60
LSSKALAPSA SPPSKPSLQR NMSNPTETMK SDHSFSRLLE LAADNDVEGF KQCICDTSAI  120
CEVGLWYSFQ RLSKKIVLQH RTPLMVAAEY GSVDVVKLIL SLTKADVNLT CGLDKSTALH  180
CAASGGSVNA VDVVKLLLFA GADSNLTDAH GNRPFDVIVV HPNVPDSRVS LEDLLKNGGS  240
VSFDELQVSS VDLRSSSSLS SSSDDSSLSS LTCKSDDVHA FVAPEKKEYP IDPSLPDIKD  300
SIYASDEFRM YSFKIRPCSR AYSHDWTECP FAHPGENARR RDPRKFHYSC MPCPDHRKGA  360
CSRGDMCEYA HGIFESWLHP AQYRTKLCKD GTSCMRRVCF FAHALDELRP LYASTGSGMP  420
SPQSATAMNM LPGSPSAVSA MLPSPFTPPM SPSNDILCLS MAWPQQNIPT LHLPSSNLQA  480
SRLRSSLNAR DIPVEDLGML RDFEMQNQLI NEFSHSQPQF GTSSGGNMSV RLNRLTPTKL  540
DQLSYPEISS PQYSDQFAAS NVFSPSHKSM VLNQLQQQQQ NMSSPINTNV FSPMNVDHPL  600
LQASFGISSP GRMSPRKMEP ISPMSPRVST LTPREKLLQQ LHSLSLREHG PRLSCDLKSD  660
SPIGSVLNSW SKLESPSMKI DWSIQADELN HLRRSHSFGR NGEGLDVSTV QSHMRETPSK  720
MKETTPAPPS SMSFPTEGAN LNPQSESGDH LGAWLDQLQL DQIVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.116290.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446119.10.0zinc finger CCCH domain-containing protein 56
RefseqXP_006470610.10.0zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_006470611.10.0zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_006470612.10.0zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_024047012.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A067FDI90.0A0A067FDI9_CITSI; Uncharacterized protein
STRINGXP_006470610.10.0(Citrus sinensis)
STRINGXP_006446118.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain