PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g004138m | ||||||||
Common Name | CISIN_1g004138mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 772aa MW: 89032.7 Da PI: 8.7384 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.3 | 3.9e-21 | 59 | 134 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+k+++gkw++++++++HnHe+ orange1.1g004138m 59 EFYTQYAERVGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLN--------------SRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFD 134 6***************************************876..............589***************************985 PP | |||||||
2 | FAR1 | 66.1 | 9.6e-21 | 210 | 284 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GF+vr+ + +sk++g++t+r+fvCskeg++++ +r+gC a +++k+++ g w v++l+++HnH+l orange1.1g004138m 210 QFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDL 284 6***************************************999..............4899**************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-17 | 59 | 133 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.6E-16 | 210 | 284 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.0E-28 | 385 | 477 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.878 | 647 | 693 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-6 | 668 | 695 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.0E-5 | 668 | 692 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MRSSNTDLNT EVCENAMVLN AYPIGVLSVI DNVNGADEGW SRMEPSVGLE FDTADDAREF 60 YTQYAERVGF KIRIGQLYRS RTDGSVSSRR FVCSKEGFQL NSRTGCSAYI RVQKRDSGKW 120 VLDQMKKDHN HEFDSAGENS LPTVKQRNHS AKKSSVNVSH RPKIKSFADG GSCPSGVINF 180 KRLRSSAGEG ECIPEPYAGL EFNSANEAYQ FYQAYAEKTG FRVRIGQLFR SKNDGSVTSR 240 RFVCSKEGFQ HPSRVGCGAF MRIKRKEFGS WIVDRLQKDH NHDLECQMGA NKKTFATSKK 300 FIEDVSGGLD SVDLAEINNG SIIKISQENN IGSAWYRVLF EYFQTRQSED TGFFHSVEVD 360 NGRCMSVFWA DGRSRFSCSQ FGDAIIFDTS YRKTNYLIPF ATFVGINHHR HPVLLGCALV 420 ANESKESFTW LFNTWIRAMF GCHPKTIIAD QDMAIQQAIA RIFPRTHHRF SMWQIRAKER 480 ENLRSMSNQF VFEYNKCIYQ SQSIAQFSTM WTALIEKYGQ RDNIWLKEMY EKRESWVPLY 540 LRRSFFAGIP IGKSIESFFG ATLTAQTPLR EFISRYTQGL ERRREEERKE DFNTWNLQAF 600 LQTKEPIEEQ CRRLYTRNMF KIFQNELLQS FDYLVTKTNE EATIVRYLVR KCGNEDEKHV 660 VTFSALNVSC SCQMFEFEGM LCGHILKVFN LLNVKEIPSQ YILHRWTRNA EYGVLRDTES 720 GFSAQELKAL MVWSLRETAS KYVESGTGSL EKHKLAYEIM REGGNKLCWQ R* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006489231.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 | ||||
Refseq | XP_015389066.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 | ||||
Refseq | XP_024947920.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 | ||||
Swissprot | Q9M8J3 | 0.0 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A067G8F4 | 0.0 | A0A067G8F4_CITSI; Uncharacterized protein | ||||
STRING | XP_006489231.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5730 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 0.0 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g004138m |
Publications ? help Back to Top | |||
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