PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003369m
Common NameCISIN_1g001969mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 826aa    MW: 90920.9 Da    PI: 7.1083
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003369mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67e-166693499
                       SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+++++r+
  orange1.1g003369m  6 QELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLLLGIRRA 69
                       489***********************************************..5688889****997 PP
2Auxin_resp121.18.1e-4094177183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  orange1.1g003369m  94 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 177
                        79********************************9889********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.392170IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-20297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-23283IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-13669IPR003340B3 DNA binding domain
CDDcd100171.20E-8659No hitNo description
PfamPF065073.6E-3594177IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MQPPAQELMA RDLHDNIWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ  60
QLLLGIRRAN RQPANLSSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVVP  120
LAKYYKAVHS NQISLGMRFR MMFETEESGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW  180
DESTAGEKRN RVSIWEIEPV TAPFFICPPP FFRSKHPRQA DDDASDLDNV FKRTMPWIGD  240
DFGVKDSQSL PGLSLVQWMN MQQNPSLANA MQSSYMHSLP GSILQNLNGG LSQMPQQNNL  300
QYTGQSLPQQ VPQIDQLAKL PSTVNPLGSN ILPQQPLGDI SQQSRQNMIT QNLPSGPVQA  360
QVLQPQNLVQ TSNILQQQPS IQNPQLPANL PQNLQQQQQQ QHIMGQNQQQ NLMQTQLPDP  420
INQNLQMSDK QIQLHLLQKL QQQRQSLLSQ QSALQQPAQL IQLQDQQRQL LDASQSFSRS  480
GTPTQMLEMH QVTPTSLPQS NIMSQQIANS GSLNNVQFSQ PPQQPKLEQQ QPGILPQMPG  540
HMGLPASHII NPVSTAGNSA LTGAAGVGQS VITDDNPSCS TSPSTNNCQR LIQPTINSRT  600
HRSAGIGEEV AQSASALLNP SALETMPSNA NLVKDLPHKS DVKPSVNISK TQNQGFFTPQ  660
TYLNGAATQT DYLDTSSSTT SVCLSQNDVH LQQNNSLSYN PQSTLRDASQ DGEVPVDPRS  720
NIPYGANIDG PLGSMNPDPL LTKGMMGLGK DFSNNISSGA MLANYENSKD AQQELSSSIV  780
SQSFGVPDMA FNSIDSTIND SSFLNGGPWA PPPQFPQRMR TYTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-972198192388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453190.20.0LOW QUALITY PROTEIN: auxin response factor 19
RefseqXP_006474325.20.0LOW QUALITY PROTEIN: auxin response factor 19-like
TrEMBLA0A067FFL50.0A0A067FFL5_CITSI; Auxin response factor
STRINGXP_006474325.10.0(Citrus sinensis)
STRINGXP_006453190.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-135auxin response factor 19