PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001904m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 998aa    MW: 114440 Da    PI: 9.1033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001904mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00021906928323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        Cp   Cgk F ++ +L++H r+H
  orange1.1g001904m 906 CPvkGCGKKFFSHKYLVQHRRVH 928
                        9999*****************99 PP
2zf-C2H212.40.00046964990123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                        y+C    Cg++F+  s++ rH r+  H
  orange1.1g001904m 964 YVCAepGCGQTFRFVSDFSRHKRKtgH 990
                        899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035514881903IPR015880Zinc finger, C2H2-like
SMARTSM003550.0045904928IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.362904933IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-6904940No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5905927IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280906928IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-9928956IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014934958IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741934963IPR007087Zinc finger, C2H2
PROSITE patternPS000280936958IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-9944988No hitNo description
Gene3DG3DSA:3.30.160.601.5E-9957987IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.62964990IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.468964995IPR007087Zinc finger, C2H2
PROSITE patternPS000280966990IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 998 aa     Download sequence    Send to blast
MCDDKETKLT ECLLERKYQQ NFHAAAAAAG SQDLSFISLD CEDEASLQIS NVQPEFRRDY  60
LNDKNPEMSE CSVEFETDKH DCSKPNGFDG CFGDPIAASY ASKCAPVIHG GENVEFSKAI  120
VPVMNAEMSF APRSDEDSSR MHVFCLEHAV EVEQQLRPIG GVDIFLLCHP DYPKMVAEAK  180
LVAEELGIDS LCDEISFRVA TKEDEKRIHL SLDSEDAIPG NGDWAVKLGI NLFYSANLSR  240
SPLYSKQMPY NSIIYNAFGR SSPASSPNKY DNGRRPARQR KVVAGKWCGR VWMSNQAHPF  300
LVQKDPEEQE LERSFHAWTT PDENFERKPE SICQTTSTLV TRKYSRKRKM VAESVSTKKA  360
KCIDTEDAGS KYSLEGDTRI QQRRILRNKP AKLMEKKDVD LPDSSEVSSY QQKRSVSRRK  420
QAKCIQREVG DSNDALPGNS LIQYRRIPKR KHAKCIGRED AVLDDLTDDS SLKQYRRIPR  480
SKLAKHVARE DEVSDNSLRG TSDRQHTSIP KGKEFTCIDR DDAISDDSLQ DNSRQLQFNR  540
VPKSKQAEWI EREDAASDDS LEDYPHRLQH KKIPNIKQPK CIESEDPVLD NLLEKNTLRL  600
HHQRILKSKR AKCVEREDAV SDDLLEDSSH MLPRRSQKSK QAKWMVREDA VSDDSLEDNS  660
RQLYQRIPKS KPSKWIERED AVSDDSLEDN SHQQHKRIPR DKQSKCTEME DTVFYDSAED  720
NIQQFRRIAR KRANFTERED AVLYDLLDNK SHRRHCRTLR SKQLRTETLR KMKQETPSHM  780
KPGKSRLTKQ ETSRLVKQVT SRQHSVKSEQ NAKLFDSVVE QELEGGPSTR LRKRIPKPQK  840
EFETKPKEKN PAAKKKVKNA SVVKAPAGLN NAKIKDEEAG YHCDMEGCTM SFGTKQELVL  900
HKKNICPVKG CGKKFFSHKY LVQHRRVHLD DRPLKCPWKG CKMTFKWAWA RTEHIRVHTG  960
ARPYVCAEPG CGQTFRFVSD FSRHKRKTGH SAKKSRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-6987999521137Lysine-specific demethylase REF6
6a58_A1e-6987999521137Lysine-specific demethylase REF6
6a59_A1e-6987999521137Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344349SRKRKM
2444450RRIPKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476948.10.0lysine-specific demethylase REF6
TrEMBLV4TIR40.0V4TIR4_9ROSI; Uncharacterized protein
STRINGXP_006476948.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-83relative of early flowering 6