PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001821m
Common NameCISIN_1g001728mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 1010aa    MW: 112951 Da    PI: 7.3483
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001821mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.5e-23115216199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  orange1.1g001821m 115 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI-- 202
                        99*****************************954.5444.38************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g001821m 203 RDEKSQLLLGIRRA 216
                        45677789999997 PP
2Auxin_resp123.61.4e-40241323183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++++sdldp+rW+nS+Wr+L+
  orange1.1g001821m 241 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQ 323
                        79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-44105244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-42107230IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-20114215No hitNo description
PfamPF023626.6E-21115216IPR003340B3 DNA binding domain
SMARTSM010193.7E-24115217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421115217IPR003340B3 DNA binding domain
PfamPF065071.9E-35241323IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1010 aa     Download sequence    Send to blast
MIPGERKTIN SELWHACAGP LVSLPPVGSL VVYFPQGHSE QVAASMQKEN DFIPNYPNLP  60
SKLICMLHSV TLHADPETDE VYAQMTLQPV NKYEKEAILA SDMGLKQNRQ PTEFFCKTLT  120
ASDTSTHGGF SVPRRAAEKI FPPLDYSMQP PAQEIVARDL HDTTWTFRHI YRGQPKRHLL  180
TTGWSVFVST KRLFAGDSVL FIRDEKSQLL LGIRRANRQQ PALSSSVISS DSMHIGILAA  240
AAHAAANNSP FTIFYNPRAS PSEFVIPLAK YNKAMYTQVS LGMRFRMMFE TEESGVRRYM  300
GTITSISDLD PLRWKNSQWR NLQVGWDEST AGERPSRVSL WETEPVVTPF YICPPPFFRP  360
KFPKQPGMPD DESDIENAFK RAMPWLGDDF GMKDATSSIF PGLSLVQWMS MQQNNQFPAA  420
QSGFFPSMVS STGLHSNFGT DDPSKLLNFQ ASALAAPNLQ FSKANPQNQV NQLPQSPIAW  480
TQQQQLQHLL QNPLNQQQQQ HPQLHQQRQQ QQQLLHPQQS QQQQQQQQNH HHHNQQPPPP  540
PQLQPSPTPP HSQSQSQSPV PQRPQQQPQQ QQQQPQQQIF LPTHVNNGVL VPNANQNVQQ  600
PTVYSQLQQP QLLTSNTQAP QGILSNNKNS YQLTSLPQDS QFQQQMEQST GPLQRQQQQS  660
QLQQSSLQFL QQSLAQRAQQ QPQVQQLAQQ SMSDQQLQSQ LQQKLQQQQQ QQLLSPAGSL  720
LQPQLLQQQL AHQQNQQLSQ LPPSQNHQQQ LSNNLSASVL VQPQQLPMNQ PQNQNRPLTG  780
TRAHSNHTDG DAPSCSTSPS SNNCQISPSN FLNRNQQGPA MLMGDSVVEP SSNLVQELHS  840
KSDARIKHEL PISKGPEHLK YNGSMTDQVE ASSSGTSYCL DPGNIQQNFS LPTYCLDGDT  900
QSHPRNSLPF VANIDGMAPD TLLSRGYDSQ KDLHNLLSNY GGTPRDIETE LSTAAISSQS  960
FAVPNIPFKP ACSNEVGINE AGVLGNGLWA NQTQRMRTFT KVCYAIYSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-174434445388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034120.10.0auxin response factor 19 isoform X2
TrEMBLA0A067GEP40.0A0A067GEP4_CITSI; Auxin response factor
STRINGXP_006452860.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19