PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.397360.1
Common NameCsa_1G587970, LOC101218275
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 326aa    MW: 35684.9 Da    PI: 8.5738
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.397360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19190223134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Cucsa.397360.1 190 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 223
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.5E-19184235IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13186223No hitNo description
PROSITE profilePS5011412.651188220IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.5E-15188223IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-13189221No hitNo description
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
PfamPF003204.5E-17190223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAPPYRDSFP SDHDDLDLHY SSSHHLFFPI LTPQASSSSS SSLSFTALDH SMISDDPLAR  60
SIELKHEGGV IMGCNNDQSI GNHEDHMEET GLRFTIWKQI DKRETSSCCE NNNNDSTHND  120
SVKWSSSSSS SKIKFMINSN QTETTLTRTI ESGRNVQDLN NSPSPSSFEQ TNKRTSTTTL  180
HDGGAIIRTC SDCNTTKTPL WRSGPRGPKS LCNACGIRQR KARRAMAEAA AAAANGGAVV  240
VKTNKVVQHK ITTKPATTLK RKYKDEVVVV GGDKKGGGRK KLCFEEIKMG GRLSEISSSY  300
QRVFPQDERE AAILLMTLSY GLLHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-178LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-178LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135818.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A0A0LZE40.0A0A0A0LZE4_CUCSA; Uncharacterized protein
STRINGXP_004158464.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3115622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-28cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]