PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.397230.1
Common NameCsa_1G586820, LOC101208130
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HRT-like
Protein Properties Length: 479aa    MW: 53167.5 Da    PI: 9.8662
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.397230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like45.61.2e-14268298231
        HRT-like   2 CGvile.dGsvCkrqPvkgRKRCeeHKGmRi 31 
                     CGv ++ +G vC+++Pv+gRKRC+eHKGm+i
  Cucsa.397230.1 268 CGVVIGhNGEVCRKPPVEGRKRCAEHKGMKI 298
                     9*988648*********************97 PP
2HRT-like64.61.4e-20356386131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGv l dGs+C+r+Pv+gRKRCeeHKG+Ri
  Cucsa.397230.1 356 ICGVVLYDGSPCRRPPVQGRKRCEEHKGQRI 386
                     8*****************************7 PP
3HRT-like52.86.7e-17426456131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGv l++G  C+rqPvkgR RC eHKGmR+
  Cucsa.397230.1 426 MCGVDLGNGLNCTRQPVKGRVRCGEHKGMRT 456
                     6*****************************5 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MVAELSPIRL KREDCKRTKH DSDFSKWEIL VASSDWEDYS LGKEGAERYR IHNLPKVSGP  60
GLYELGITVS SSGLGREIAK LDADWIVVVY LGEADNVRTR LQHYGRSGSH LGNAYFCVVD  120
CKVFPLEKGP SLFQEMFSRG YSIVYRWAPM KNKKNAQMTE TQLLKTFDYA WNTSGNGARR  180
HDDVLKKLEN IASQTTKSTF ISRKLLPFTQ KKMGIKIKTS KSIPMVNKPA EDAEERNNFF  240
SRILSFSRSR PRLVDNTNDV NWADSNSCGV VIGHNGEVCR KPPVEGRKRC AEHKGMKING  300
LLKNSSSRFI LQKPVNVGTT IYGEKDFSCS KSEIPNSTEE CSVSNSFPNK GSSLPICGVV  360
LYDGSPCRRP PVQGRKRCEE HKGQRICRST LVTSKYQQTS PISKPESTVI AQGTSSELSS  420
SGLERMCGVD LGNGLNCTRQ PVKGRVRCGE HKGMRTNKLI STLATSNKPD VSDTGSVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135702.10.0PREDICTED: uncharacterized protein LOC101208130
TrEMBLA0A0A0LWE70.0A0A0A0LWE7_CUCSA; Uncharacterized protein
STRINGXP_004135702.10.0(Cucumis sativus)
STRINGXP_004168219.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.17e-90effector of transcription2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]