PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.388800.1

Common Name

Csa_7G378570, LOC101220379

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 443aa MW: 48683 Da PI: 6.2005

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.388800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.5	8.1e-15	247	301	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +r+rr+ +NRe+ArrsR+RK+a + eLe+ v +L e ++L k+l +++++ Cucsa.388800.1 247 DARRARRMLSNRESARRSRRRKQAHLNELETQVGQLRVEHSTLLKRLTDVNQKYD 301 679*****************************************99999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.7E-11	244	300	No hit	No description
SMART	SM00338	8.6E-18	245	309	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.07	247	301	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-12	248	301	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.35E-11	249	299	No hit	No description
PROSITE pattern	PS00036	0	252	267	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.2E-12	316	390	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MHTFFSSEDL SDNSFWPPQP APSSSPPSHS PFRSPDPSLT MNRSASEWAF ERFLEEVSAL 60 PVNSCPSTTS DRVAVSPVDV ASPASQSSTS KRDEVDDEIV EIKKADCDHD RSHPIPPSDP 120 SKMVRSSSER YRVFLKTQLD MACAAVALSR AASLEPQGPV QPTDHRGQTS NAFQFGMQAP 180 GQGSDRGTST KESEVSGSPL GIPSLPAMPK KLGVQPAQTT SGSSRDESDD DDLEGDIENI 240 ENMDPADARR ARRMLSNRES ARRSRRRKQA HLNELETQVG QLRVEHSTLL KRLTDVNQKY 300 DDAAVDNRIL KADIETLRAK VKMAEETVKR VTGVNPLLVA MSQTQMPFVN GNQMPMQSNT 360 QFFHQNMSAF ANSPPNHQNL EVPVPPNPPT IQHVGRSHND VATEMTDLPS VHIDHVQKQP 420 MHAPMSGWDA EPSHATPNHK KN*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MHTFFSSEDL SDNSFWPPQP APSSSPPSHS PFRSPDPSLT MNRSASEWAF ERFLEEVSAL  60
PVNSCPSTTS DRVAVSPVDV ASPASQSSTS KRDEVDDEIV EIKKADCDHD RSHPIPPSDP  120
SKMVRSSSER YRVFLKTQLD MACAAVALSR AASLEPQGPV QPTDHRGQTS NAFQFGMQAP  180
GQGSDRGTST KESEVSGSPL GIPSLPAMPK KLGVQPAQTT SGSSRDESDD DDLEGDIENI  240
ENMDPADARR ARRMLSNRES ARRSRRRKQA HLNELETQVG QLRVEHSTLL KRLTDVNQKY  300
DDAAVDNRIL KADIETLRAK VKMAEETVKR VTGVNPLLVA MSQTQMPFVN GNQMPMQSNT  360
QFFHQNMSAF ANSPPNHQNL EVPVPPNPPT IQHVGRSHND VATEMTDLPS VHIDHVQKQP  420
MHAPMSGWDA EPSHATPNHK KN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	268	RRSRRRKQ
2	263	268	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659270.1	0.0	PREDICTED: light-inducible protein CPRF2-like
Swissprot	Q99090	3e-74	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A0A0K5J3	0.0	A0A0A0K5J3_CUCSA; Uncharacterized protein
STRING	XP_004162189.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13691	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54620.1	1e-38	basic leucine zipper 25

Link Out ? help Back to Top
Phytozome	Cucsa.388800.1
Entrez Gene	101220379

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]