PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.379880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 26629.9 Da PI: 8.9504 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.7e-17 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l++ v ++G ++W+ Ia+ g++Rt+k+c++rw +yl Cucsa.379880.2 9 KGPWTEQEDIQLICFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++Tt+E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Cucsa.379880.2 62 RGKMTTQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 107 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.755 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-29 | 6 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-10 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 27.066 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-16 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 64 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-11 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVEGQEIRKG PWTEQEDIQL ICFVGLFGDR RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL 60 KRGKMTTQEE RLVLELHAKW GNRWSKIARK LPGRTDNEIK NYWRTHMRKK AQEKRRGLSA 120 SSSSSSSSSS SSISSSSSSF NNPAKEFPAD TGPVKFFDSG GSEISASSST KKKIEENKEV 180 GGDQNGYTMD DIWKDIEDYC CGDSLWKMEE EESKLIFSGW PCLGLAQPNQ NFFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-29 | 6 | 111 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN811440 | 0.0 | LN811440.1 Lilium hybrid division I mRNA for MYB48, cultivar Prato. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148216.1 | 1e-167 | PREDICTED: transcription factor MYB48 isoform X1 | ||||
Swissprot | Q9LX82 | 1e-79 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A1S3BIY1 | 1e-147 | A0A1S3BIY1_CUCME; transcription factor MYB48-like isoform X1 | ||||
STRING | XP_004148216.1 | 1e-167 | (Cucumis sativus) | ||||
STRING | XP_004166626.1 | 1e-167 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-72 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.379880.2 |
Publications ? help Back to Top | |||
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