PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.378560.1
Common NameCsa_3G750350, LOC101208693
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 551aa    MW: 61440.6 Da    PI: 4.9807
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.378560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-351232152103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+++i+ed+ l++++sw + g+sfvv+d+ ef+k +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++gkk+ll++
  Cucsa.378560.1 123 FLWKTFDIVEDPVLDSIVSWGSAGQSFVVWDPVEFSKVILPSNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEDFQRGKKHLLKN 208
                     99***************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  Cucsa.378560.1 209 IQRRKSS 215
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.4E-53119212IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-33119212IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-37120212IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.0E-16123146IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-30123212IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-16161173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340162186IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-16174186IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MKPIKEGDSV TPVAVSSSSG QSEFDAAGFS SDPESMLLPF SRPLMGSESF SPWLSMVSIG  60
FSSSPSTGGF LGENPMPSSA AHHMFDVMLE PDKRTLDPFV VPCMESDVPQ PLESLHGQFV  120
PPFLWKTFDI VEDPVLDSIV SWGSAGQSFV VWDPVEFSKV ILPSNFKHNN FSSFVRQLNT  180
YGFRKIDTDK WEFANEDFQR GKKHLLKNIQ RRKSSHSQQI GSLIGPSTGG GKSGLKDEIG  240
RLKKERSMLM QEVVELQQQQ KGTAQHVNTV NQRLQSAEQR QKQMISFLAK LLQNPEFLVC  300
LQKKKEQKDI DSSRTKRRFV KQHKHEDGFT PSVEGQIVKY QPDWENLARS STTPDLNPSL  360
LEGPFAYLLQ GVFGELGSIP EGMPNFQFKN ASSSDVIASE EFVFHHGVVK PTEELRVEAS  420
NKSMDDQHFK GKAIESPPEE SNPDYFLSLA EGILQSSHHG TRGVIKPEKI WDAYLNADVS  480
PSGSSTKLWS NPECFEDPFL QISSEQSPIW DFDSQQAGDS STDKWLASGF PFDDPDNQAY  540
PKNADESDDK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2212021717125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6820800.0LN682080.1 Cucumis melo genomic scaffold, unanchored_scaffold00259.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651989.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A0A0LDV80.0A0A0A0LDV8_CUCSA; Uncharacterized protein
STRINGXP_004161246.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-82heat shock transcription factor A3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]