PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.375180.1
Common NameCsa_3G303630, LOC101222180
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 167aa    MW: 19001.8 Da    PI: 9.8937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.375180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++ +   G   +W+++++  g+ R++k+c++rw +yl
   Cucsa.375180.1 14 KGPWTSEEDKKLINFIVTNGQScCWRAVPKLAGLLRCGKSCRLRWTNYL 62
                     79******************99***********99************97 PP
2Myb_DNA-binding51.72e-1675112847
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
   Cucsa.375180.1  75 EEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 112
                      999************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-19563IPR009057Homeodomain-like
PROSITE profilePS5129413.142962IPR017930Myb domain
SuperFamilySSF466891.76E-2511109IPR009057Homeodomain-like
SMARTSM007171.5E-101364IPR001005SANT/Myb domain
PfamPF002491.2E-131462IPR001005SANT/Myb domain
CDDcd001671.09E-71662No hitNo description
PROSITE profilePS5129424.9963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2464117IPR009057Homeodomain-like
SMARTSM007171.7E-1367115IPR001005SANT/Myb domain
PfamPF002494.8E-1475112IPR001005SANT/Myb domain
CDDcd001671.61E-1175113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRQPCCEKV GLKKGPWTSE EDKKLINFIV TNGQSCCWRA VPKLAGLLRC GKSCRLRWTN  60
YLRPDLKRGL LSDFEEKMVI DLHAQLGNRW SKIASHLPGR TDNEIKNHWN THIKKKLRKM  120
GIDPQTHKHI SISTDSHQSN LPSSHLDTEM SPSSPVNNIP ETKDPGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818541e-125LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042.
GenBankLN7132601e-125LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145848.11e-121PREDICTED: protein ODORANT1-like
SwissprotQ9C7U74e-87MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A0A0L7231e-119A0A0A0L723_CUCSA; Uncharacterized protein
STRINGXP_004145848.11e-120(Cucumis sativus)
STRINGXP_004160119.11e-120(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-89myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]