PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.365850.1
Common NameLOC101211577
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 310aa    MW: 32725.6 Da    PI: 8.4586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.365850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19133182255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++ a+++++g
  Cucsa.365850.1 133 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDGAALRFRG 182
                     7********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-13133182IPR001471AP2/ERF domain
PROSITE profilePS5103225.818133190IPR001471AP2/ERF domain
SMARTSM003809.9E-36133196IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22133190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-32133191IPR001471AP2/ERF domain
PRINTSPR003676.9E-12134145IPR001471AP2/ERF domain
CDDcd000181.14E-18141191No hitNo description
PRINTSPR003676.9E-12156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MCYLKVANQG GGDGDGDRDE LEGMFSSSAG ELMAMVSALT HVISGGSAAP ATVRTAVGTP  60
ATGCRKRERE EGGESGMIVD STAVQSFSMP SPAIFLREEG GSSSSNTISV VTAATTAPTM  120
AAAFSGEDRI RRRYRGVRQR PWGKWAAEIR DPQKAARVWL GTFDTAEAAA RAYDGAALRF  180
RGSKAKLNFP EFVSVFPPSS LPSATHLASS PVVVPPQDAI GNYLQYSRLL PNSRETSSQP  240
VPAFERVLCN SPLVNPSSLV SSSGVSNFPF PLSEQQVRHY LPPENQSQGN GGSSMPFPTG  300
FSYRPPANG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22132190463ATERF1
3gcc_A2e-22132190463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8122350.0LN812235.1 Cucumis sativus mRNA for ethylene-responsive transcription factor 114, cultivar Summer Green.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138542.21e-177PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0A0KBY01e-176A0A0A0KBY0_CUCSA; Uncharacterized protein
TrEMBLA0A0C7KKK21e-176A0A0C7KKK2_CUCSA; Ethylene-responsive transcription factor 114
STRINGXP_004138542.11e-177(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2447633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-17ethylene response factor 110