PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.364340.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | EIL | ||||||||
Protein Properties | Length: 616aa MW: 70000.6 Da PI: 5.1169 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 521.5 | 3.4e-159 | 50 | 428 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 +el++rmw+d+mll+rlke++k+ ke ++++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+LraWW Cucsa.364340.3 50 DELERRMWRDRMLLRRLKEQSKE----KEG-ADSSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWW 139 79*******************98....677.8999************************************************************ PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS EIN3 96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190 kekv+fdrngpaai+kyqa+++i+++++++++ s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtG+e+ww+elgl+kdq Cucsa.364340.3 140 KEKVRFDRNGPAAIAKYQADHAIPGNNNDCNS-VASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGDEEWWPELGLPKDQ 233 ******************************88.9************************************************************* PP -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXXXXXXXXXXXX CS EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspkvtlsceqked 283 g+ppykkphdlkkawkvsvLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+++++++++ ++ + +s ++ +s+ +++d Cucsa.364340.3 234 GPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDkcPPVSICGSGSLLISDTSDYD 328 *************************************************************************76555566************** PP XX.XXXXXX.XXXXXXXXXX...............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXX CS EIN3 284 ve.gkkeskikhvqavktta...............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadk 346 ve +++e++++ +++k ++ + ++++krk+ ++es+++++ + ++tc+ sq+++++ +l+f d+ Cucsa.364340.3 329 VEgVEDEPNVE-GEENKPHDlnffnmgapgsrerlmmppvgpqikeefmenNSDFNQKRKQMTEESNTIMNPR-IYTCEYSQCPYNSARLGFLDR 421 **767777744.5555665689**************************************9888888888776.5******************** PP XXXXXXX CS EIN3 347 nsisqne 353 ns+++++ Cucsa.364340.3 422 NSRNNHQ 428 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 9.8E-132 | 50 | 297 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 3.5E-76 | 170 | 307 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 4.71E-62 | 176 | 300 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MNTMGIFEDI GFCRNLEYFS APPGEQETAQ EHEAEAVLEE DYSDEELDVD ELERRMWRDR 60 MLLRRLKEQS KEKEGADSSK QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI 120 IPEKGKPVSG ASDNLRAWWK EKVRFDRNGP AAIAKYQADH AIPGNNNDCN SVASTPHTLQ 180 ELQDTTLGSL LSALMQHCDP PQRRFPLEKG VSPPWWPTGD EEWWPELGLP KDQGPPPYKK 240 PHDLKKAWKV SVLTAVIKHM SPDIAKIRKL VRQSKCLQDK MTAKESATWL AIVNQEEALA 300 RKLYPDKCPP VSICGSGSLL ISDTSDYDVE GVEDEPNVEG EENKPHDLNF FNMGAPGSRE 360 RLMMPPVGPQ IKEEFMENNS DFNQKRKQMT EESNTIMNPR IYTCEYSQCP YNSARLGFLD 420 RNSRNNHQLN CPFRSDSSHI FSMPSFQTNE DKSSSPIPPS FNHPKAPARL MNPTPPFRVS 480 GLGLPEDGQK MISDLLSFYD SNLQQDKPLN SGNLDMPDDH NQQQQLPKFQ LQVDDNLYSQ 540 AAMVGNTMPI QQHADFSSNK HPFDEYKAAF DTPFGMYPND NISDFRFGSP FNLASIDYAA 600 ADTQLPKQDT PLWYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 2e-82 | 174 | 306 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 2e-82 | 174 | 306 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681821 | 0.0 | LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140927.1 | 0.0 | PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Refseq | XP_011656591.1 | 0.0 | PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A1S3C4F9 | 0.0 | A0A1S3C4F9_CUCME; ETHYLENE INSENSITIVE 3-like 1 protein isoform X1 | ||||
STRING | XP_004140927.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.364340.3 |