PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.363120.1

Common Name

Csa_6G074580

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ARR-B

Protein Properties

Length: 243aa MW: 28285.7 Da PI: 8.9835

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.363120.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	61.3	1.9e-19	181	230	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +p+l Wt++LH+ F++ v+ L G ekA Pk+il++m+v+gL e++ SHLQ Cucsa.363120.1 181 RPKLIWTQQLHNTFLHTVRAL-GLEKAHPKEILQHMNVPGLRKENISSHLQ 230 589****************.*************************** PP
2	Response_reg	50.9	8.5e-18	17	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT..TTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee..pklpiivvtahgeeedaleal 90 vl+vd + + +++++++l+ +y ev a+ + +al++++e++ ++l+l+ + +p+m +e+l+++ ++ +klpi+++++ ++e l +l Cucsa.363120.1 17 VLVVDHDSTSLKIVCKMLDLCRY-EVVIASCAIDALRMVREREneIHLVLTELHLPDMGSYEFLEKLvMDQQilKKLPIVIMSDDDNEIAKLGCL 110 89*******************.***********777777******************655559****************** PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 Ga+ +l+Kp ++ +++ Cucsa.363120.1 111 YKGAMLHLVKPLTMKTIRN 129 *********99988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00448	4.1E-12	15	131	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF52172	2.99E-22	16	150	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	31.151	16	135	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	6.6E-22	16	142	No hit	No description
Pfam	PF00072	8.6E-12	17	129	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	7.81E-13	21	135	No hit	No description
SuperFamily	SSF46689	1.79E-11	179	233	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-18	180	230	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-16	182	232	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MELTKKWEAC EVVVCRVLVV DHDSTSLKIV CKMLDLCRYE VVIASCAIDA LRMVRERENE 60 IHLVLTELHL PDMGSYEFLE KLVMDQQILK KLPIVIMSDD DNEIAKLGCL YKGAMLHLVK 120 PLTMKTIRNL WQFAIIKGII TQPLPPNNDN IVHVPVQQQQ QQKMIKITKQ QPHHSTKVMK 180 RPKLIWTQQL HNTFLHTVRA LGLEKAHPKE ILQHMNVPGL RKENISSHLQ VLNYIYTYIL 240 IYM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	1e-103	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	1e-103	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008460204.1	1e-140	PREDICTED: two-component response regulator ARR10-like
TrEMBL	A0A0A0K8W7	1e-168	A0A0A0K8W7_CUCSA; Uncharacterized protein
STRING	XP_008460204.1	1e-139	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14554	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01760.1	2e-28	response regulator 14

Link Out ? help Back to Top
Phytozome	Cucsa.363120.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]