PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.353170.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 350aa    MW: 39066.9 Da    PI: 7.3034
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.353170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07121141526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G Ck Gd+C FaHg
  Cucsa.353170.1 121 ACPEFRK-GNCKKGDSCDFAHG 141
                     7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-5116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5120143IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5121141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.756151175IPR000571Zinc finger, CCCH-type
SMARTSM0035610151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMIGEQSRFN HTIQVPPWDP LDDHHMTGIS SPVFISSGVD SFIDSFSSIH RYLPSAADSD  60
ELDGVGEAVD GFSCDHFRMF EFKIRRCARG RSHDWTECPY AHPGEKARRR DPRKYHYSGT  120
ACPEFRKGNC KKGDSCDFAH GIFECWLHPA RYRTQPCKDG LACRRRVCFF AHTPEQLRVL  180
PQQSPRTPVS TDSVDGSSRI AHAFDSYFSK GSFVTSPTSI LSTPPVSPPS DSPPLSPNCP  240
FNSVNGLVSC MRNLQLGKLK ATPHWGRIQL GQNPLSPSSS GLYNLPSTPT TGNYELWGKN  300
YEEEPAMERV ESGRDLRAQM YAKLSKDNSV KEMDPILTPD VGWVSELLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141305.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-111C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S3BTV60.0A0A1S3BTV6_CUCME; zinc finger CCCH domain-containing protein 20-like
STRINGXP_004141305.10.0(Cucumis sativus)
STRINGXP_004167716.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-113C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]