PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.353050.1

Common Name

Csa_4G645240, LOC101203971

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 406aa MW: 43653.8 Da PI: 5.482

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.353050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	241	289	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Cucsa.353050.1 241 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 289 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-16	236	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.08E-11	236	293	No hit	No description
PROSITE profile	PS50888	15.485	238	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	239	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-7	241	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	244	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MGDLENDEMG FRNSNDGLMN CPSTMAMGSF FGSGWDPLVS LGQSENYGAA SSMVSSHGEF 60 SNSFPVVLEN HGGSGTTQQG VQYPTDLEMG SKLPCFGSGN FSEMFGSFGV AGQILGGCSS 120 NYRNGGTTNT TQTSQENLPL AGEEILPLSV GSPNGKIRKR GLDSTFPFSS NKKSDMKLKK 180 DVSGDSSSTQ EEKNAEMEQN LGGNSRGKST GKQTKEKSSN SAEAPKENYI HVRARRGQAT 240 NSHSLAERVR REKISERMRL LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA 300 TVNPDVNVDI ERILSKDIFN IRGSSGNVLG FDPGLSAVSP VPPHRMFQFQ GTMSSMPTTS 360 TQFPPMPQTM LESDLQSLLQ MGFDSGSTID NLGPNGILQT TVFAK*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MGDLENDEMG FRNSNDGLMN CPSTMAMGSF FGSGWDPLVS LGQSENYGAA SSMVSSHGEF  60
SNSFPVVLEN HGGSGTTQQG VQYPTDLEMG SKLPCFGSGN FSEMFGSFGV AGQILGGCSS  120
NYRNGGTTNT TQTSQENLPL AGEEILPLSV GSPNGKIRKR GLDSTFPFSS NKKSDMKLKK  180
DVSGDSSSTQ EEKNAEMEQN LGGNSRGKST GKQTKEKSSN SAEAPKENYI HVRARRGQAT  240
NSHSLAERVR REKISERMRL LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA  300
TVNPDVNVDI ERILSKDIFN IRGSSGNVLG FDPGLSAVSP VPPHRMFQFQ GTMSSMPTTS  360
TQFPPMPQTM LESDLQSLLQ MGFDSGSTID NLGPNGILQT TVFAK*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00135	DAP	Transfer from AT1G10120	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141299.2	0.0	PREDICTED: transcription factor bHLH74-like
TrEMBL	A0A0A0L0K5	0.0	A0A0A0L0K5_CUCSA; Uncharacterized protein
STRING	XP_004163540.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7585	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-79	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.353050.1
Entrez Gene	101203971

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]