PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.352560.1 | ||||||||
Common Name | Csa_4G641690, LOC101218543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 197aa MW: 21672.9 Da PI: 8.512 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.4 | 9e-20 | 9 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Edell ++v+ +G+++W++I++ ++ gR++k+c++rw + Cucsa.352560.1 9 KGPWSPDEDELLRRLVHNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 54 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.6e-17 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T +Ed+ +++a+ ++G++ W+tIar ++ gRt++ +k++w++ Cucsa.352560.1 63 PFTSDEDDTIIQAHSRFGNK-WATIARLLN-GRTDNAIKNHWNST 105 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.287 | 4 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-32 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-17 | 8 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-19 | 9 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-26 | 10 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.90E-17 | 11 | 53 | No hit | No description |
SMART | SM00717 | 1.3E-13 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.968 | 61 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 63 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-14 | 63 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-11 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MATITDRIKG PWSPDEDELL RRLVHNYGPR NWSLISKSIP GRSGKSCRLR WCNQLSPEVE 60 HRPFTSDEDD TIIQAHSRFG NKWATIARLL NGRTDNAIKN HWNSTLKRKS SSSAPEDDHP 120 LKRSTSASAP PLYFNPSSPS GSDLSDSSLS GMSSSQVCKP FPPVPPLISH SNHPPMDTTS 180 IDPPTSLTLS LPGSDSX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-42 | 8 | 109 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-42 | 8 | 109 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141275.1 | 1e-141 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | Q9FDW1 | 6e-77 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A0A0L3P9 | 1e-139 | A0A0A0L3P9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141275.1 | 1e-140 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-71 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.352560.1 |
Entrez Gene | 101218543 |