PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.341860.1
Common NameCsa_3G852530, LOC101214179
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 270aa    MW: 29832.7 Da    PI: 8.599
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.341860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.2e-32102155255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cucsa.341860.1 102 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 155
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.06E-1699156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28100156IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23102155IPR006447Myb domain, plants
PfamPF002491.6E-7103154IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MNTPSSFPDL SLQISLPMST LPCEAKATKP RSSTTMDSSS SGKSDLSHES GLFHHLGFEA  60
GDLEVPPRRP HQAACCNVRD HRDFKRSGGR VGCGVRRNIR APRMRWTTTL HAHFVHAVEL  120
LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKNTV KETADDCGRP EVEEDGMVLS  180
SCVKKSNFGS NHFQRIQSSS LVTSMHNSCH RTKSNADAFA KSRGIKVEGS NGDYQEAITM  240
ERINLEFTLG RPSWQLDFGD SKELALLNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-17103157357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17103157357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17103157357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17103157357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818261e-165LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132581e-165LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652394.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A0A0LFY80.0A0A0A0LFY8_CUCSA; Uncharacterized protein
STRINGXP_008454673.11e-170(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.13e-43G2-like family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]