PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.341020.1

Common Name

Csa_3G848130, LOC101202785

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 280aa MW: 30712.7 Da PI: 9.8465

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.341020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	5.8e-13	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE++ l+ +v+++G+g Wk I + ++R+ ++k++w+++ Cucsa.341020.1 5 KQKWTSEEEDALLAGVNKHGPGKWKNILKDPDfapslTHRSNIDLKDKWRNL 56 79************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.374	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.1E-16	2	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-15	4	56	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-8	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-9	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	2.81E-21	6	56	No hit	No description
SuperFamily	SSF46785	4.46E-15	111	193	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	5.4E-14	112	177	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.4E-12	113	182	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	24.181	114	182	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	6.1E-10	116	175	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGNQKQKWTS EEEDALLAGV NKHGPGKWKN ILKDPDFAPS LTHRSNIDLK DKWRNLSVST 60 ASQGSKEKSR AAPKAKAIVA AISNNQTSAP AKPNASADAA GDDTPNNSTQ DGKNVPRYYS 120 MIFEALSTIK DSNGCDIGTI VNFIEQRHEV PQNFRRQLSS KLRRLVSQGK LEKVQNCYRV 180 KKDNSLAVKT PTPKQKDVRQ RISQYNTTGG VMPSAETVED AAKAAAYKVA DAENKSFLAA 240 EAVKEAERIA KMAEDTDSML QIIKEMYEKC SRGEIILLA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00231	DAP	Transfer from AT1G72740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681827	1e-155	LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBank	LN713258	1e-155	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146812.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
TrEMBL	A0A0A0LDD1	0.0	A0A0A0LDD1_CUCSA; Uncharacterized protein
STRING	XP_004146812.1	0.0	(Cucumis sativus)
STRING	XP_004154792.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3228	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	1e-74	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cucsa.341020.1
Entrez Gene	101202785

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]