PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.340320.1
Common NameCsa_3G842110, LOC101202840
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 433aa    MW: 46813 Da    PI: 7.6074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.340320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-08106128326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++lC+f+ + G C +Gd+C++ H+
  Cucsa.340320.1 106 EKLCNFWVQ-GNCTFGDKCRYLHS 128
                     579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.7372147IPR000571Zinc finger, CCCH-type
SMARTSM003560.0542146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7104128IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6105129IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-7107126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.109.6E-16127242IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509786.68E-47129182IPR017986WD40-repeat-containing domain
SMARTSM003203.3E-6134173IPR001680WD40 repeat
PfamPF004001.9E-5137173IPR001680WD40 repeat
PROSITE profilePS5029421.357141343IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.652141182IPR001680WD40 repeat
PRINTSPR003201.1E-6160174IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
SMARTSM0032014213250IPR001680WD40 repeat
SuperFamilySSF509786.68E-47220428IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.4E-31243426IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.2E-4257294IPR001680WD40 repeat
PfamPF004000.0078261294IPR001680WD40 repeat
PROSITE profilePS5008211.979264303IPR001680WD40 repeat
PRINTSPR003201.1E-6281295IPR020472G-protein beta WD-40 repeat
SMARTSM003202.7E-4297334IPR001680WD40 repeat
PfamPF004000.003299333IPR001680WD40 repeat
PRINTSPR003201.1E-6321335IPR020472G-protein beta WD-40 repeat
SMARTSM0032020340381IPR001680WD40 repeat
SMARTSM003205.2384421IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDVDGGGKRV FQRLGAPSGD SRNQKVCFHW RAGKCSRYPC PYLHRELNGP PHAASNGAAN  60
AASKRGHGFA SDDSSVSVPR RSPNFSGGST WGRVHGGGNR IIRKTEKLCN FWVQGNCTFG  120
DKCRYLHSWS LGESFSHLTQ LDGHQKVITG ITFPSGSDKL YTGSKDETVR VWDCQSGQCM  180
AIINLGGQVG SMIAEGPWVF VGIPNCVKAW NIQTSADLSL SGPVGLVYSL VVGNDLLFAG  240
TQDGSILAWK FNVATNCFEP AASLSGHTLP VVSLVVGANR LYSGSMDHTI KVWSLESLQC  300
LQTLTDHTSV VMSVLCWEQF LLSCSLDKTI KVWAATESGN LEVTYTQKED HGLLTLCGMH  360
DLDGKPILLC SCNDNSVRLY DLPSFSERGK IYSKEEIRSI QAGPGGIFFT GDGTGQVKVW  420
TWLTEQAVAA SM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-221314284323Tako8
6g6n_A1e-221314284323Tako8
6g6n_B1e-221314284323Tako8
6g6n_C1e-221314284323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818400.0LN681840.1 Cucumis melo genomic scaffold, anchoredscaffold00098.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141129.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0A0LD640.0A0A0A0LD64_CUCSA; Uncharacterized protein
STRINGXP_004168011.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]