PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.339770.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 218aa    MW: 25131.1 Da    PI: 7.7593
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.339770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
   Cucsa.339770.1 20 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 67
                     79********************************************97 PP
2Myb_DNA-binding51.52.3e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+ ++++++G++ W++Ia+ ++ gRt++++k++w++
   Cucsa.339770.1  73 RGNITPDEQLLIMELHAKWGNK-WSKIAKQLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-231470IPR009057Homeodomain-like
PROSITE profilePS5129415.9191567IPR017930Myb domain
SuperFamilySSF466895.24E-3018114IPR009057Homeodomain-like
SMARTSM007178.1E-131969IPR001005SANT/Myb domain
PfamPF002491.6E-162067IPR001005SANT/Myb domain
CDDcd001671.52E-102267No hitNo description
PROSITE profilePS5129424.71868122IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2471122IPR009057Homeodomain-like
SMARTSM007171.0E-1372120IPR001005SANT/Myb domain
PfamPF002492.6E-1573116IPR001005SANT/Myb domain
CDDcd001676.03E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDKRACNNNN NSPQDVEVRK GPWTMEEDLI LINYIANHGE GVWNSLAKSA GLKRTGKSCR  60
LRWLNYLRPD VRRGNITPDE QLLIMELHAK WGNKWSKIAK QLPGRTDNEI KNYWRTRIQK  120
HIKQAHGFHT PQSSTNILLS SQDHHHHHHH QIMNNEQAAS SSSCQVSYTM DPMETYSPPT  180
YSQNIDAFSV PLPPTDNSND NYWSMEDLWS MQLLNAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241712224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-173LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-173LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141095.11e-164PREDICTED: myb-related protein 305-like
SwissprotP813912e-96MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1S3B8861e-150A0A1S3B886_CUCME; myb-related protein 305
STRINGXP_004141095.11e-163(Cucumis sativus)
STRINGXP_004168850.11e-163(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.19e-88myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]