PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.338960.1
Common NameCsa_3G826690, LOC101204730
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 314aa    MW: 35126.2 Da    PI: 6.3515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.338960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++q+G+g+W+++++  g+ R+ k+c++rw +yl
   Cucsa.338960.1 14 KGPWTPEEDIVLVSYIQQHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.26.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
   Cucsa.338960.1  67 RGNFTHHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.244965IPR017930Myb domain
SuperFamilySSF466891.36E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001677.52E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129419.30566116IPR017930Myb domain
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PfamPF002495.7E-1467112IPR001005SANT/Myb domain
CDDcd001673.60E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRPPCCDKQ GVKKGPWTPE EDIVLVSYIQ QHGPGNWRAV PANTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF THHEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNHWNT HLKKRLNNHH  120
RQPSPAADLT ADPAADTLFT TRGQWERRLQ TDIQMAKQAL SDALSPETSK PPPTLLPIEE  180
SKTSHPQIPA YASSADNIAR WLKEWNKNPP TNNPSRSSSS AVVDSGDGSG GKVNGAGLSE  240
SMDTLMSLEY FESSNNSDGS PETSVFQGES ESMDENEELL PMKLLEEWLH GDSKDYYFTD  300
FTVDEKFKLD NLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147470.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-101MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0A0LC460.0A0A0A0LC46_CUCSA; Uncharacterized protein
STRINGXP_004163532.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.12e-96myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]