PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.337130.4
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 184aa    MW: 20317.9 Da    PI: 6.9614
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.337130.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.64.1e-1618462755
         G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                    AtPk +l++m+v+gLt++hvkSHLQkYRl
  Cucsa.337130.4 18 ATPKGVLRVMGVPGLTIYHVKSHLQKYRL 46
                    9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-151847IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-111847IPR006447Myb domain, plants
SuperFamilySSF466891.97E-61846IPR009057Homeodomain-like
PfamPF143791.9E-2278123IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MIDLWMLSHN LVDQIVGATP KGVLRVMGVP GLTIYHVKSH LQKYRLAKYL PESPADGSKD  60
EKRSSESLSG TDSSSGLQIN EALRMQMEVQ KRLQEQLEVQ RQLQMRIEAQ AKYLQKIIEE  120
QQKLGGESKD SEVVPSAEDN KQKTCQSESY GDVSAGPSSP RKKQRVDHGS TDDSAPSPSI  180
NLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-121LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-121LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443160.11e-125PREDICTED: protein PHR1-LIKE 1-like isoform X2
SwissprotQ9SJW07e-52PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A1S3B8411e-124A0A1S3B841_CUCME; protein PHR1-LIKE 1-like isoform X2
STRINGXP_004136602.11e-115(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-34G2-like family protein