PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.322560.1
Common NameCsa_3G002860, LOC101210622
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 444aa    MW: 48927.7 Da    PI: 8.6594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.322560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.8e-14275320454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  A eYIk+L
  Cucsa.322560.1 275 NHVEAERQRRQKLNQRFYALRSVVPNV-----SKMDKASLLADAAEYIKEL 320
                     799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-3118182IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.352271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-19273340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.54E-15274325No hitNo description
Gene3DG3DSA:4.10.280.102.0E-19275339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-17277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDEINISPSS SPNSNTTLQQ RLQFILHNRH EWWAYSIFWL ASKDINGNLV FTWGDGHLRD  60
GNGSGGGGGG CQLISFGFDD VSMDRVEGGN FVNLEWYYTG SINQTYGAVD NVVGRVFDSS  120
AYIWLTADNG LYLYDCERVK EARLRGVQTL VFVSTSVGVL ELGSSELIKQ DWSLVQYAKS  180
LFGSASSCTS STLFKQKDHH VGIGGGGMIQ PQAPSCSGFI KRETGHGGGG SSSDSLSDNS  240
DGNFMSTKIN SNVGKKRGKR SAKNNKTELS SLPVNHVEAE RQRRQKLNQR FYALRSVVPN  300
VSKMDKASLL ADAAEYIKEL KSKVQKLESK LKQSQHQTSS STISTVEQTI SSITSYTNNN  360
NNNNNVEVQL IGSEAMVRVQ CRDENYPSAR LLNVLKELGL QVHHASLSSV NEMMLQDVVV  420
RVPHAVAWRD QRTLRTAILQ RLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-24273337670Transcription factor MYC2
5gnj_B1e-24273337670Transcription factor MYC2
5gnj_E1e-24273337670Transcription factor MYC2
5gnj_F1e-24273337670Transcription factor MYC2
5gnj_G1e-24273337670Transcription factor MYC2
5gnj_I1e-24273337670Transcription factor MYC2
5gnj_M1e-24273337670Transcription factor MYC2
5gnj_N1e-24273337670Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-114LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-114LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146202.20.0PREDICTED: transcription factor MYC3-like isoform X2
TrEMBLA0A0A0L4Y40.0A0A0A0L4Y4_CUCSA; Uncharacterized protein
STRINGXP_004159750.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-48bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]