PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.321580.1
Common NameCsa_3G016400, LOC101215069
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 561aa    MW: 62418.4 Da    PI: 5.5262
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.321580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.16.1e-26315369256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                      +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQ kYR++
  Cucsa.321580.1 315 LKVDWTPELHRKFVQAVEQL-GVNQAIPSRILELMKVEGLTRHNVASHLQqKYRMH 369
                     5899****************.9***************************549**86 PP
2Response_reg25.56.5e-10201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d + + +  +++ le+ +y +v +  +  +al  +  k   +++ ++ +  ++ +G   +k +++++ +lp i+++     +++ +++ +G
  Cucsa.321580.1  20 VLLLDGDTSSAAEIKTKLEEMEY-VVVTYCNENDALSAISSKPetFHVAIVEVTTSNHEGN--FKFLEAAK-DLPTIMISNIHCLSTMMKCIALG 110
                     78888899999999*********.***************665555************9995..56666655.9*******9999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a++fl Kp + ++l++
  Cucsa.321580.1 111 AMEFLQKPLSDDKLRN 126
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.6E-1416163No hitNo description
SMARTSM004480.008718128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.20319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.62E-621131No hitNo description
PROSITE profilePS5129414.21311370IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-24312371IPR009057Homeodomain-like
SuperFamilySSF466891.42E-15312371IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-23314370IPR006447Myb domain, plants
PfamPF002491.3E-6317364IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVCTANDLHG WKDFPKGLRV LLLDGDTSSA AEIKTKLEEM EYVVVTYCNE NDALSAISSK  60
PETFHVAIVE VTTSNHEGNF KFLEAAKDLP TIMISNIHCL STMMKCIALG AMEFLQKPLS  120
DDKLRNIWQH VVHKAFNAGG SAFPNSLKPI KESVVSMLHL ELENSENENQ VQKNLEILNS  180
DDDNNHELLE GSDKYPAPST PQQKHGMRLV DDGDCQDQLN SSLEKECGEQ DGESKSVETT  240
CINSLVEGTS QVENSQLPDQ EAIKEEENSA DGSGAASNID LDTHDQDNIS SSEKNKSIPC  300
GLSNPCGTKI SRKKLKVDWT PELHRKFVQA VEQLGVNQAI PSRILELMKV EGLTRHNVAS  360
HLQQKYRMHK RHILPKEEDG SWSHSKDPMR KNYYPQRPVM AFPPPYHSNH IMPVAPIYPP  420
WGHMACPSPG VQMWVPPGYP PWRPPEIWPW KSYPGMHADT WGCPVTPPPH SPLSSHPQQH  480
ISGFENVDPY DKSYSIAFSP VELQLADEEI DKVVKEAISK PWLPLPLGLK PPSTESVLSE  540
LSKQGISTVP SHINGSQLIQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-15319369655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650360.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-143APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0A0L1C30.0A0A0A0L1C3_CUCSA; Uncharacterized protein
STRINGXP_004150172.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-136ARR-B family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]