PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.320600.1 | ||||||||
Common Name | Csa_3G033810, LOC101219601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20590.4 Da PI: 8.6215 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 214.5 | 3.3e-66 | 17 | 182 | 6 | 169 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvss 98 s+q+Cyv+Cn C+t+lavsvPstslfk vtvrCG+C++ll vn+ + ll++ s+++ ++ + l ++++ e+++ + + ++t+ Cucsa.320600.1 17 PSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVNMCGGM-LLPSPSQFHGFTHSTtfLSPNTHNFLEEISNPNPNFLMNQTEGID 110 68*****************************************987765.566666643332222233333333333333333333333444444 PP YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++ + ++vpr+pp ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+i fg Cucsa.320600.1 111 LTMATRVPNDVPRQPPtINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIRFG 182 4668889999**999989****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.7E-66 | 17 | 182 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.77E-9 | 121 | 176 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.7E-5 | 131 | 177 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.32E-5 | 137 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSSSSHPTTF SQLPPPPSDQ LCYVHCNICD TVLAVSVPST SLFKRVTVRC GYCANLLPVN 60 MCGGMLLPSP SQFHGFTHST TFLSPNTHNF LEEISNPNPN FLMNQTEGID LTMATRVPND 120 VPRQPPTINR PPEKRQRVPS AYNRFIKDEI QRIKAANPDI SHREAFSAAA KNWAHFPHIR 180 FGSSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 1e-81 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 1e-81 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150647.1 | 1e-136 | PREDICTED: protein YABBY 4 isoform X2 | ||||
Swissprot | A2X7Q3 | 9e-61 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 9e-61 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0A0L1N8 | 1e-134 | A0A0A0L1N8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004150647.1 | 1e-135 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-58 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.320600.1 |
Entrez Gene | 101219601 |
Publications ? help Back to Top | |||
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