PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.313950.1 | ||||||||
Common Name | Csa_3G914600, LOC101214098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28517.7 Da PI: 9.3784 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.3e-14 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l +++ +G g+W++ +++ g+ R +k+c++rw +yl Cucsa.313950.1 17 KGLWSPDEDQRLRNYILNYGHGCWSSLPSKAGLERNGKSCRLRWINYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.9e-15 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E+ ++ ++++lG++ W+ Ia++++ gRt++++k+ w++yl Cucsa.313950.1 70 RGTFSQQEQHTILSLHHMLGNK-WSQIAQHLP-GRTDNEVKNLWHSYL 115 899*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 12 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.063 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-27 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-10 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-12 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-8 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 23.988 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-7 | 72 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVRETTASHR TKSKHRKGLW SPDEDQRLRN YILNYGHGCW SSLPSKAGLE RNGKSCRLRW 60 INYLRPGLKR GTFSQQEQHT ILSLHHMLGN KWSQIAQHLP GRTDNEVKNL WHSYLKKKLD 120 KQQQKQAYHS STNSTTSDSA DSSTTNPSIH SPIPNNNISQ LPKLFFAEWL TVGSSSNGGS 180 EFGPSTTNNL IGQPNFEFGM SLGSELLQNN GIIMDSHVKF EDHHISNGFA NYASDGDVCV 240 EHLLHFGNGF MNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 17 | 120 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 0.0 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148377.1 | 0.0 | PREDICTED: transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 7e-58 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A0A0LEM1 | 0.0 | A0A0A0LEM1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165764.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3830 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 5e-55 | myb domain protein 45 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.313950.1 |
Entrez Gene | 101214098 |
Publications ? help Back to Top | |||
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