PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.313480.2
Common NameCsa_3G904140, LOC101203265
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 522aa    MW: 58627.4 Da    PI: 6.2027
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.313480.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.92e-27278331155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++++SHLQkYR+
  Cucsa.313480.2 278 KTKVDWTPELHRNFVQAVEQL-GIDHAIPSKILELMKVEGLTRHNIASHLQKYRM 331
                     6799*****************.********************************8 PP
2Response_reg23.72.3e-09201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d + + +  +r+ le+ +y +v +++d +ea   + +    +++ +l +   + d  e +k + +++ +lpii+ ++    +++ +++ +G
  Cucsa.313480.2  20 VLLLDRDSFSATEIRSKLEEMEY-VVYSCTDEKEASSAILNTPgnFHVAILEVCARNYD--ESFKLLGASK-DLPIIMTSDVHCLSTMMKCIALG 110
                     788888999999999********.999999999999999776667*******9999977..7788886655.8********99************ PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++++l++
  Cucsa.313480.2 111 AVEFLLKPLSEDKLRN 126
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.8E-1516143No hitNo description
SuperFamilySSF521722.7E-1516139IPR011006CheY-like superfamily
PROSITE profilePS5011022.50919132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.3E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.20E-821132No hitNo description
PROSITE profilePS5129416.614275334IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-27276334IPR009057Homeodomain-like
SuperFamilySSF466891.7E-18277335IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-25278332IPR006447Myb domain, plants
PfamPF002491.8E-7281330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MVCTADDLQE WKDFPKGLRV LLLDRDSFSA TEIRSKLEEM EYVVYSCTDE KEASSAILNT  60
PGNFHVAILE VCARNYDESF KLLGASKDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS  120
EDKLRNIWQH VIHKAYSNSS KPDEDSVASL MQFQLQNEDK NGVPEDMEIL SWIQDIVWEQ  180
PEGSDDRSQL NLGASRQASW ESGDQMNCSM ETDCKDKDVQ SKFVETTSHD LICEGPIQEG  240
QPQLSDKKKI GVKSDPLAAE NSIQGTGVNQ SAGSKAKKTK VDWTPELHRN FVQAVEQLGI  300
DHAIPSKILE LMKVEGLTRH NIASHLQKYR MQKKHVMQRE ENTRWSHYPT RSTLQTNHLK  360
PIMAYPSYHP NCGISVSAVY PTWRQTNDHP PNVHVWGPLG YRHWPQPGIQ PWNSYAGVQA  420
DTWGCPVMPP SHAPYFSYPQ LVSASQHNMH TVNKSYGMPQ GLFDLQPDEE VVDKIVKEAM  480
KKPWSPLPLG LKPPSTESVL TELSKKGIST VPPQIDGSRS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16278334157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1792030.0KU179203.1 Cucumis sativus cultivar Q30 two-component response regulator-like protein APRR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652667.10.0PREDICTED: two-component response regulator-like APRR2 isoform X4
TrEMBLA0A0A0LEG60.0A0A0A0LEG6_CUCSA; Two-component response regulator-like protein APRR2
STRINGXP_004148499.10.0(Cucumis sativus)
STRINGXP_004172463.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-107ARR-B family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Liu H, et al.
    Map-based cloning, identification and characterization of the w gene controlling white immature fruit color in cucumber (Cucumis sativus L.).
    Theor. Appl. Genet., 2016. 129(7): p. 1247-56
    [PMID:26934889]