PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.313480.1 | ||||||||
Common Name | LOC101203265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARR-B | ||||||||
Protein Properties | Length: 529aa MW: 59385.3 Da PI: 6.2933 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.9 | 3.9e-27 | 287 | 338 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++++SHLQkYR+ Cucsa.313480.1 287 KVDWTPELHRNFVQAVEQL-GIDHAIPSKILELMKVEGLTRHNIASHLQKYRM 338 899****************.********************************8 PP | |||||||
2 | Response_reg | 23.7 | 2.4e-09 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d + + + +r+ le+ +y +v +++d +ea + + +++ +l + + d e +k + +++ +lpii+ ++ +++ +++ +G Cucsa.313480.1 20 VLLLDRDSFSATEIRSKLEEMEY-VVYSCTDEKEASSAILNTPgnFHVAILEVCARNYD--ESFKLLGASK-DLPIIMTSDVHCLSTMMKCIALG 110 788888999999999********.999999999999999776667*******9999977..7788886655.8********99************ PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++++l++ Cucsa.313480.1 111 AVEFLLKPLSEDKLRN 126 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-15 | 16 | 147 | No hit | No description |
SuperFamily | SSF52172 | 2.7E-15 | 16 | 139 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 22.509 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.5E-6 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.23E-8 | 21 | 132 | No hit | No description |
PROSITE profile | PS51294 | 14.194 | 282 | 341 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.33E-18 | 285 | 342 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-25 | 286 | 339 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.7E-26 | 286 | 341 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-7 | 288 | 337 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MVCTADDLQE WKDFPKGLRV LLLDRDSFSA TEIRSKLEEM EYVVYSCTDE KEASSAILNT 60 PGNFHVAILE VCARNYDESF KLLGASKDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS 120 EDKLRNIWQH VIHKAYSNSS KPDEDSVASL MQFQLQNEDK NGVPEDMEIL SWIQDIVWEQ 180 PEGSDDRSQL NLGASRQASW ESGDQMNCSM ETDCKDKDVQ SKFVETTSHD LICEGPIQEG 240 QPQLSDKKKI GVKSDPLAAE NSIQGTGVNQ SAGSKAKKTK VKLSDSKVDW TPELHRNFVQ 300 AVEQLGIDHA IPSKILELMK VEGLTRHNIA SHLQKYRMQK KHVMQREENT RWSHYPTRST 360 LQTNHLKPIM AYPSYHPNCG ISVSAVYPTW RQTNDHPPNV HVWGPLGYRH WPQPGIQPWN 420 SYAGVQADTW GCPVMPPSHA PYFSYPQLVS ASQHNMHTVN KSYGMPQGLF DLQPDEEVVD 480 KIVKEAMKKP WSPLPLGLKP PSTESVLTEL SKKGISTVPP QIDGSRSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-16 | 290 | 341 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU179204 | 0.0 | KU179204.1 Cucumis sativus cultivar W33 two-component response regulator-like protein APRR2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652665.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X2 | ||||
TrEMBL | A0A140CWL0 | 0.0 | A0A140CWL0_CUCSA; Two-component response regulator-like protein APRR2 | ||||
STRING | XP_004148499.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004172463.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3566 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-105 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.313480.1 |
Entrez Gene | 101203265 |
Publications ? help Back to Top | |||
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