PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.312990.2
Common NameCsa_3G901160, LOC101210161
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 351aa    MW: 38112.8 Da    PI: 7.5182
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.312990.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-0888112126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  Cucsa.312990.2  88 FKTKLCCKFRA-GTCPYITNCNFAHS 112
                     69*********.*************8 PP
2zf-CCCH18.73.2e-06162187126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  Cucsa.312990.2 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187
                     78888********************7 PP
3zf-CCCH41.81.8e-13231256126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  Cucsa.312990.2 231 WKTRICNKWELTGYCPFGNKCHFAHG 256
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-1485120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-885118IPR000571Zinc finger, CCCH-type
SMARTSM003560.003587113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8487114IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-588112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-9160189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7160189IPR000571Zinc finger, CCCH-type
SMARTSM003560.086161188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098161189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-17226260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-10227261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225230258IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9230257IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10231256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDYSGGNVVH VISGTSNENW PGEVWATEDE YRAWNNGGDG SVDTPSNSSY DQRQSQSRSG  60
SEPPNKKSRS SQDVTSSNRS KAIGKMFFKT KLCCKFRAGT CPYITNCNFA HSIEELRRPP  120
HNWQEIVAAH EEEKAVLSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGGGS GNGSNTKPSN WKTRICNKWE  240
LTGYCPFGNK CHFAHGAAEL HRYGGGLMET ETRDSSAAPP DLKQGVLPKA PGDTLVASVP  300
SAPHSDVYHV VVPSQRSTIV IQRPGQRTHQ KWKGPDKISR IYGDWIDDIE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205219SGGGGGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136190.20.0PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ9LQM31e-130C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0A0LK260.0A0A0A0LK26_CUCSA; Uncharacterized protein
STRINGXP_004167357.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-130C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]