PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.312990.1 | ||||||||
Common Name | Csa_3G901160, LOC101210161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 352aa MW: 38241 Da PI: 7.5182 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.4e-08 | 88 | 112 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Cucsa.312990.1 88 FKTKLCCKFRA-GTCPYITNCNFAHS 112 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3.2e-06 | 163 | 188 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Cucsa.312990.1 163 YKGRHCKKFYTEEGCPYGDSCTFLHD 188 78888********************7 PP | |||||||
3 | zf-CCCH | 41.8 | 1.8e-13 | 232 | 257 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Cucsa.312990.1 232 WKTRICNKWELTGYCPFGNKCHFAHG 257 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-14 | 85 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-8 | 85 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 87 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 88 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-7 | 161 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-9 | 161 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.086 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-17 | 227 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-10 | 228 | 262 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-9 | 231 | 258 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 231 | 259 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-10 | 232 | 257 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MDYSGGNVVH VISGTSNENW PGEVWATEDE YRAWNNGGDG SVDTPSNSSY DQRQSQSRSG 60 SEPPNKKSRS SQDVTSSNRS KAIGKMFFKT KLCCKFRAGT CPYITNCNFA HSIEELRRPP 120 HNWQQEIVAA HEEEKAVLSE PREEFQIPSL GTSNFGSESQ RSYKGRHCKK FYTEEGCPYG 180 DSCTFLHDEQ SKNRESVAIS LGPGGYSGGG GGGGGGGGGG SGNGSNTKPS NWKTRICNKW 240 ELTGYCPFGN KCHFAHGAAE LHRYGGGLME TETRDSSAAP PDLKQGVLPK APGDTLVASV 300 PSAPHSDVYH VVVPSQRSTI VIQRPGQRTH QKWKGPDKIS RIYGDWIDDI E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 220 | SGGGGGGGGGGGGGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 0.0 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652645.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X1 | ||||
Swissprot | Q9LQM3 | 1e-128 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A0A0LK26 | 0.0 | A0A0A0LK26_CUCSA; Uncharacterized protein | ||||
STRING | XP_004167357.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7751 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-128 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.312990.1 |
Entrez Gene | 101210161 |
Publications ? help Back to Top | |||
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