PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.311930.1 | ||||||||
Common Name | Csa_3G891670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 391aa MW: 42883.4 Da PI: 8.287 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 203 | 248 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++W++ Ed+ l+ av++ G g+W+ I + Rt+ q+ rw Cucsa.311930.1 203 RKPWSKAEDLELIAAVEKCGEGNWANILKGDFkGDRTASQLSQRWS 248 789************************9842235999999999995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.978 | 198 | 255 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-13 | 199 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.96E-12 | 200 | 252 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-9 | 202 | 253 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-7 | 203 | 247 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.96E-14 | 204 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MMGKKENRRT GTISMEDCSP LLERYSVRTI LTLLREVAQV SGVRIDWDKL VENTSTGISD 60 AREYQLLWRH LAYRQTLLED MHSVTDSLEF DLQDYDSDLD FEVEPFPSVS SESSNEASAC 120 VKVLIANSIP NESDVPNSSA VEAPLTIGIS NCQPSTDNLD HHQSTYLQRM SVTIPLSIQR 180 QPIPMPSATE VIDVNGATSR KRRKPWSKAE DLELIAAVEK CGEGNWANIL KGDFKGDRTA 240 SQLSQRWSVI RKRRCNLNIG ASTSSTAHKA QIDAAHRALS FALDLPVNNS KTANSNINSS 300 IVSSASGSES SIQMQNQSPQ ISMPSRRINT PKNSLMIKST HDSDSIVRAT AVAAGARIVS 360 PSDAASLLKA TQTKNAIHIK SKCKLKLCKW * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 1e-108 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 1e-108 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652579.1 | 0.0 | PREDICTED: uncharacterized protein LOC101205013 isoform X2 | ||||
TrEMBL | A0A0A0LHM8 | 0.0 | A0A0A0LHM8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136421.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-59 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.311930.1 |
Publications ? help Back to Top | |||
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