PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.310210.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 606aa MW: 70741.5 Da PI: 7.3092

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.310210.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.6e-24	58	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAk+vGF +r+s+s +++++e +++++ Cs g++++++ + ++r+etrtgC a++ +++ + ++w++ ++eleHnH+++ Cucsa.310210.1 58 DFYNVYAKDVGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIIIRLIDIKRWRIVEVELEHNHPVS 142 6***************************************99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-21	58	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-25	264	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.137	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-4	558	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-6	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence Send to blast
MEEVCLNSEP IFDECDEYEV DGDDSFVDND ESGEAQSRKN PPLPTVGLEF NSFDEAYDFY 60 NVYAKDVGFG IRVSNSWFRS KKKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIII 120 RLIDIKRWRI VEVELEHNHP VSPQITRFYK SHKKMILAAK KTQPQLHPVT EVHTIKLYRR 180 TILNNCNRST NVDQSEGISS VDHLKYLELK DGDGHALYNY FCRMKLTNPN FFYMMDLDND 240 GHLRNVFWAD SRSKSAYCYF CDTITIDTTC LTNRYEIPLI SFVGVNNHGQ SVLLGCGFVG 300 FESVEYFVWI LKAWLKCMLG RTPQVIITHQ NKILLAAVSE VFPKARHCYS MWYIMQRIPE 360 KLGGLEGYET MRSQLNEIIF SSLKIAEFET SWTNMIKHNG LGDNKWLQSL YEDRTLWAPV 420 YLKDIFFAGL VPTRANESFK TFFDGYVHKH TSFKEFVDKY DLALHRKYHK EAVADLESRN 480 LSVELKTRCN FELQLSKVYT KEIFSKFQSE VEGMYSCFNT RQVNVNGPIV TYIVKERIEV 540 EGNEKEVRCF EVLYETTEVD IRCICSLFNY KGYLCRHALN VFNYNGVEEI PARYILPRWC 600 KDYKCX

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence Send to blast

MEEVCLNSEP IFDECDEYEV DGDDSFVDND ESGEAQSRKN PPLPTVGLEF NSFDEAYDFY  60
NVYAKDVGFG IRVSNSWFRS KKKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIII  120
RLIDIKRWRI VEVELEHNHP VSPQITRFYK SHKKMILAAK KTQPQLHPVT EVHTIKLYRR  180
TILNNCNRST NVDQSEGISS VDHLKYLELK DGDGHALYNY FCRMKLTNPN FFYMMDLDND  240
GHLRNVFWAD SRSKSAYCYF CDTITIDTTC LTNRYEIPLI SFVGVNNHGQ SVLLGCGFVG  300
FESVEYFVWI LKAWLKCMLG RTPQVIITHQ NKILLAAVSE VFPKARHCYS MWYIMQRIPE  360
KLGGLEGYET MRSQLNEIIF SSLKIAEFET SWTNMIKHNG LGDNKWLQSL YEDRTLWAPV  420
YLKDIFFAGL VPTRANESFK TFFDGYVHKH TSFKEFVDKY DLALHRKYHK EAVADLESRN  480
LSVELKTRCN FELQLSKVYT KEIFSKFQSE VEGMYSCFNT RQVNVNGPIV TYIVKERIEV  540
EGNEKEVRCF EVLYETTEVD IRCICSLFNY KGYLCRHALN VFNYNGVEEI PARYILPRWC  600
KDYKCX

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652467.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_011652469.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_011652470.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2N9FSW5	0.0	A0A2N9FSW5_FAGSY; Uncharacterized protein
STRING	XP_008466430.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Cucsa.310210.1

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]